Literature DB >> 12519980

MGD: the Mouse Genome Database.

Judith A Blake1, Joel E Richardson, Carol J Bult, Jim A Kadin, Janan T Eppig.   

Abstract

The Mouse Genome Database (MGD) (http://www.informatics.jax.org) one component of a community database resource for the laboratory mouse, a key model organism for interpreting the human genome and for understanding human biology. MGD strives to provide an extensively integrated information resource with experimental details annotated from both literature and on-line genomic data sources. MGD curates and presents the consensus representation of genotype (sequence) to phenotype information including highly detailed information about genes and gene products. Primary foci of integration are through representations of relationships between genes, sequences and phenotypes. MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse. Recent developments include a general implementation of database structures for controlled vocabularies and the integration of a phenotype classification system.

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Year:  2003        PMID: 12519980      PMCID: PMC165494          DOI: 10.1093/nar/gkg047

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

3.  Rules and guidelines for mouse gene, allele, and mutation nomenclature: a condensed version.

Authors:  Lois J Maltais; Judith A Blake; Teresa Chu; Cathleen M Lutz; Janan T Eppig; Ian Jackson
Journal:  Genomics       Date:  2002-04       Impact factor: 5.736

4.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Authors:  Judith A Blake; Joel E Richardson; Carol J Bult; Jim A Kadin; Janan T Eppig
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 6.  The Mouse Tumor Biology Database: a public resource for cancer genetics and pathology of the mouse.

Authors:  Dieter Näf; Debra M Krupke; John P Sundberg; Janan T Eppig; Carol J Bult
Journal:  Cancer Res       Date:  2002-03-01       Impact factor: 12.701

Review 7.  Mouse as the measure of man?

Authors:  P Denny; M J Justice
Journal:  Trends Genet       Date:  2000-07       Impact factor: 11.639

8.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  8 in total
  82 in total

1.  DBSubLoc: database of protein subcellular localization.

Authors:  Tao Guo; Sujun Hua; Xinglai Ji; Zhirong Sun
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Genew: the Human Gene Nomenclature Database, 2004 updates.

Authors:  Hester M Wain; Michael J Lush; Fabrice Ducluzeau; Varsha K Khodiyar; Sue Povey
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  The Mouse SAGE Site: database of public mouse SAGE libraries.

Authors:  Petr Divina; Jirí Forejt
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  The Mouse Genome Database (MGD): integrating biology with the genome.

Authors:  Carol J Bult; Judith A Blake; Joel E Richardson; James A Kadin; Janan T Eppig; R M Baldarelli; K Barsanti; M Baya; J S Beal; W J Boddy; D W Bradt; D L Burkart; N E Butler; J Campbell; R Corey; L E Corbani; S Cousins; H Dene; H J Drabkin; K Frazer; D M Garippa; L H Glass; C W Goldsmith; P L Grant; B L King; M Lennon-Pierce; J Lewis; I Lu; C M Lutz; L J Maltais; L M McKenzie; D Miers; D Modrusan; L Ni; J E Ormsby; D Qi; S Ramachandran; T B K Reddy; D J Reed; R Sinclair; D R Shaw; C L Smith; P Szauter; B Taylor; P Vanden Borre; M Walker; L Washburn; I Witham; J Winslow; Y Zhu
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  RTCGD: retroviral tagged cancer gene database.

Authors:  Keiko Akagi; Takeshi Suzuki; Robert M Stephens; Nancy A Jenkins; Neal G Copeland
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  Genetic control of X chromosome inactivation in mice: definition of the Xce candidate interval.

Authors:  Lisa Helbling Chadwick; Lisa M Pertz; Karl W Broman; Marisa S Bartolomei; Huntington F Willard
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

9.  Identifying biological themes within lists of genes with EASE.

Authors:  Douglas A Hosack; Glynn Dennis; Brad T Sherman; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-09-11       Impact factor: 13.583

10.  Importance of ERK activation in behavioral and biochemical effects induced by MDMA in mice.

Authors:  Julie Salzmann; Cynthia Marie-Claire; Stephanie Le Guen; Bernard P Roques; Florence Noble
Journal:  Br J Pharmacol       Date:  2003-09-29       Impact factor: 8.739

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