Literature DB >> 14681462

The Mouse SAGE Site: database of public mouse SAGE libraries.

Petr Divina1, Jirí Forejt.   

Abstract

The Mouse SAGE Site is a web-based database of all available public libraries generated by the Serial Analysis of Gene Expression (SAGE) from various mouse tissues and cell lines. The database contains mouse SAGE libraries organized in a uniform way and provides web-based tools for browsing, comparing and searching SAGE data with reliable tag-to-gene identification. A modified approach based on the SAGEmap database is used for reliable tag identification. The Mouse SAGE Site is maintained on an ongoing basis at the Institute of Molecular Genetics, Academy of Sciences of the Czech Republic and is accessible at the internet address http://mouse.biomed.cas.cz/sage/.

Entities:  

Mesh：

Year:  2004        PMID： 14681462      PMCID： PMC308792          DOI： 10.1093/nar/gkh058

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  15 in total

1.  SAGEmap: a public gene expression resource.

Authors:  A E Lash; C M Tolstoshev; L Wagner; G D Schuler; R L Strausberg; G J Riggins; S F Altschul
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

2.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Authors:  Ron Edgar; Michael Domrachev; Alex E Lash
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 3.  Statistical evaluation of SAGE libraries: consequences for experimental design.

Authors:  Jan M Ruijter; Antoine H C Van Kampen; Frank Baas
Journal:  Physiol Genomics       Date:  2002-10-29       Impact factor: 3.107

4.  An anatomy of normal and malignant gene expression.

Authors:  Kathy Boon; Elisson C Osorio; Susan F Greenhut; Carl F Schaefer; Jennifer Shoemaker; Kornelia Polyak; Patrice J Morin; Kenneth H Buetow; Robert L Strausberg; Sandro J De Souza; Gregory J Riggins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

5.  NCBI Reference Sequence project: update and current status.

Authors:  Kim D Pruitt; Tatiana Tatusova; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags.

Authors:  Jianjun Chen; Miao Sun; Sanggyu Lee; Guolin Zhou; Janet D Rowley; San Ming Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-04       Impact factor: 11.205

8.  Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Authors:  Robert L Strausberg; Elise A Feingold; Lynette H Grouse; Jeffery G Derge; Richard D Klausner; Francis S Collins; Lukas Wagner; Carolyn M Shenmen; Gregory D Schuler; Stephen F Altschul; Barry Zeeberg; Kenneth H Buetow; Carl F Schaefer; Narayan K Bhat; Ralph F Hopkins; Heather Jordan; Troy Moore; Steve I Max; Jun Wang; Florence Hsieh; Luda Diatchenko; Kate Marusina; Andrew A Farmer; Gerald M Rubin; Ling Hong; Mark Stapleton; M Bento Soares; Maria F Bonaldo; Tom L Casavant; Todd E Scheetz; Michael J Brownstein; Ted B Usdin; Shiraki Toshiyuki; Piero Carninci; Christa Prange; Sam S Raha; Naomi A Loquellano; Garrick J Peters; Rick D Abramson; Sara J Mullahy; Stephanie A Bosak; Paul J McEwan; Kevin J McKernan; Joel A Malek; Preethi H Gunaratne; Stephen Richards; Kim C Worley; Sarah Hale; Angela M Garcia; Laura J Gay; Stephen W Hulyk; Debbie K Villalon; Donna M Muzny; Erica J Sodergren; Xiuhua Lu; Richard A Gibbs; Jessica Fahey; Erin Helton; Mark Ketteman; Anuradha Madan; Stephanie Rodrigues; Amy Sanchez; Michelle Whiting; Anup Madan; Alice C Young; Yuriy Shevchenko; Gerard G Bouffard; Robert W Blakesley; Jeffrey W Touchman; Eric D Green; Mark C Dickson; Alex C Rodriguez; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Yaron S N Butterfield; Martin I Krzywinski; Ursula Skalska; Duane E Smailus; Angelique Schnerch; Jacqueline E Schein; Steven J M Jones; Marco A Marra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

9.  Database resources of the National Center for Biotechnology.

Authors:  David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  MGD: the Mouse Genome Database.

Authors:  Judith A Blake; Joel E Richardson; Carol J Bult; Jim A Kadin; Janan T Eppig
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971
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  10 in total

1.  The mouse Gene Expression Database (GXD): 2011 update.

Authors:  Jacqueline H Finger; Constance M Smith; Terry F Hayamizu; Ingeborg J McCright; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

2.  hSAGEing: an improved SAGE-based software for identification of human tissue-specific or common tumor markers and suppressors.

Authors:  Cheng-Hong Yang; Li-Yeh Chuang; Tsung-Mu Shih; Hsueh-Wei Chang
Journal:  PLoS One       Date:  2010-12-17       Impact factor: 3.240

3.  Extract-SAGE: an integrated platform for cross-analysis and GA-based selection of SAGE data.

Authors:  Cheng-Hong Yang; Tsung-Mu Shihl; Yu-Chen Hung; Hsueh-Wei Chang; Li-Yeh Chuang
Journal:  Bioinformation       Date:  2009-02-27

4.  The mouse Gene Expression Database (GXD): 2007 update.

Authors:  Constance M Smith; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2006-11-27       Impact factor: 16.971

5.  SAGE2Splice: unmapped SAGE tags reveal novel splice junctions.

Authors:  Byron Yu-Lin Kuo; Ying Chen; Slavita Bohacec; Ojvind Johansson; Wyeth W Wasserman; Elizabeth M Simpson
Journal:  PLoS Comput Biol       Date:  2006-04-28       Impact factor: 4.475

6.  Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression.

Authors:  Rodrigo Malig; Cristian Varela; Eduardo Agosin; Francisco Melo
Journal:  BMC Bioinformatics       Date:  2006-11-04       Impact factor: 3.169

7.  5'SAGE: 5'-end Serial Analysis of Gene Expression database.

Authors:  Yasuhiro Kasai; Shin-ichi Hashimoto; Tomoyuki Yamada; Jun Sese; Sumio Sugano; Kouji Matsushima; Shinichi Morishita
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

8.  Clustering-based approaches to SAGE data mining.

Authors:  Haiying Wang; Huiru Zheng; Francisco Azuaje
Journal:  BioData Min       Date:  2008-07-17       Impact factor: 2.522

9.  SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.

Authors:  Tomás Norambuena; Rodrigo Malig; Francisco Melo
Journal:  Nucleic Acids Res       Date:  2007-07-10       Impact factor: 16.971

10.  Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: evidence for nonrandom gene order.

Authors:  Petr Divina; Cestmír Vlcek; Petr Strnad; Václav Paces; Jirí Forejt
Journal:  BMC Genomics       Date:  2005-03-05       Impact factor: 3.969
  10 in total

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