Literature DB >> 14681482

The mouse Gene Expression Database (GXD): updates and enhancements.

David P Hill1, Dale A Begley, Jacqueline H Finger, Terry F Hayamizu, Ingeborg J McCright, Constance M Smith, Jon S Beal, Lori E Corbani, Judith A Blake, Janan T Eppig, James A Kadin, Joel E Richardson, Martin Ringwald.   

Abstract

The Gene Expression Database (GXD) is a community resource for gene expression information in the laboratory mouse. By collecting and integrating different types of expression data, GXD provides information about expression profiles in different mouse strains and mutants. Participation in the Gene Ontology (GO) project classifies genes and gene products with regard to molecular functions, biological processes, and cellular components. Integration with other Mouse Genome Informatics (MGI) databases places the gene expression information in the context of mouse genetic, genomic and phenotypic information. The integration of these types of information enables valuable insights into the molecular biology that underlies development and disease. The utility of GXD has been improved by the daily addition of new data and through the implementation of new query and display features. These improvements make it easier for users to interrogate and visualize expression data in the context of their specific needs. GXD is accessible through the MGI website at http://www.informatics.jax.org/ or directly at http://www. informatics.jax.org/menus/expression_menu.shtml.

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Year:  2004        PMID: 14681482      PMCID: PMC308803          DOI: 10.1093/nar/gkh069

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The ARKdb: genome databases for farmed and other animals.

Authors:  J Hu; C Mungall; A Law; R Papworth; J P Nelson; A Brown; I Simpson; S Leckie; D W Burt; A L Hillyard; A L Archibald
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  A gene expression map of human chromosome 21 orthologues in the mouse.

Authors:  Yorick Gitton; Nadia Dahmane; Sonya Baik; Ariel Ruiz i Altaba; Lorenz Neidhardt; Manuela Scholze; Bernhard G Herrmann; Pascal Kahlem; Alia Benkahla; Sabine Schrinner; Reha Yildirimman; Ralf Herwig; Hans Lehrach; Marie-Laure Yaspo
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

4.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  The Mouse Genome Database (MGD): integrating biology with the genome.

Authors:  Carol J Bult; Judith A Blake; Joel E Richardson; James A Kadin; Janan T Eppig; R M Baldarelli; K Barsanti; M Baya; J S Beal; W J Boddy; D W Bradt; D L Burkart; N E Butler; J Campbell; R Corey; L E Corbani; S Cousins; H Dene; H J Drabkin; K Frazer; D M Garippa; L H Glass; C W Goldsmith; P L Grant; B L King; M Lennon-Pierce; J Lewis; I Lu; C M Lutz; L J Maltais; L M McKenzie; D Miers; D Modrusan; L Ni; J E Ormsby; D Qi; S Ramachandran; T B K Reddy; D J Reed; R Sinclair; D R Shaw; C L Smith; P Szauter; B Taylor; P Vanden Borre; M Walker; L Washburn; I Witham; J Winslow; Y Zhu
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  Connecting sequence and biology in the laboratory mouse.

Authors:  Richard M Baldarelli; David P Hill; Judith A Blake; Jun Adachi; Masaaki Furuno; Dirck Bradt; Lori E Corbani; Sharon Cousins; Kenneth S Frazer; Dong Qi; Longlong Yang; Sridhar Ramachandran; Deborah Reed; Yunxia Zhu; Takeya Kasukawa; Martin Ringwald; Benjamin L King; Lois J Maltais; Louise M McKenzie; Lynn M Schriml; Donna Maglott; Deanna M Church; Kim Pruitt; Janan T Eppig; Joel E Richardson; Jim A Kadin; Carol J Bult
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

9.  Human chromosome 21 gene expression atlas in the mouse.

Authors:  Alexandre Reymond; Valeria Marigo; Murat B Yaylaoglu; Antonio Leoni; Catherine Ucla; Nathalie Scamuffa; Cristina Caccioppoli; Emmanouil T Dermitzakis; Robert Lyle; Sandro Banfi; Gregor Eichele; Stylianos E Antonarakis; Andrea Ballabio
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

10.  A database for mouse development.

Authors:  M Ringwald; R Baldock; J Bard; M Kaufman; J T Eppig; J E Richardson; J H Nadeau; D Davidson
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

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  32 in total

Review 1.  Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case.

Authors:  Kathryn S McClelland; Humphrey H-C Yao
Journal:  Sex Dev       Date:  2017-02-15       Impact factor: 1.824

Review 2.  Understanding kidney disease: toward the integration of regulatory networks across species.

Authors:  Wenjun Ju; Frank C Brosius
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

Review 3.  Access to immunology through the Gene Ontology.

Authors:  Ruth C Lovering; Evelyn B Camon; Judith A Blake; Alexander D Diehl
Journal:  Immunology       Date:  2008-10       Impact factor: 7.397

Review 4.  The autism diagnosis in translation: shared affect in children and mouse models of ASD.

Authors:  Somer L Bishop; Garet P Lahvis
Journal:  Autism Res       Date:  2011-08-31       Impact factor: 5.216

5.  Of mice and men: aligning mouse and human anatomies.

Authors:  Olivier Bodenreider; Terry F Hayamizu; Martin Ringwald; Sherri De Coronado; Songmao Zhang
Journal:  AMIA Annu Symp Proc       Date:  2005

6.  A comparative gene expression database for invertebrates.

Authors:  Mattias Ormestad; Mark Q Martindale; Eric Röttinger
Journal:  Evodevo       Date:  2011-08-24       Impact factor: 2.250

7.  Reproducibility of histopathological findings in experimental pathology of the mouse: a sorry tail.

Authors:  Jerrold M Ward; Paul N Schofield; John P Sundberg
Journal:  Lab Anim (NY)       Date:  2017-03-22       Impact factor: 12.625

8.  DGEM--a microarray gene expression database for primary human disease tissues.

Authors:  Yuni Xia; Andrew Campen; Dan Rigsby; Ying Guo; Xingdong Feng; Eric W Su; Mathew Palakal; Shuyu Li
Journal:  Mol Diagn Ther       Date:  2007       Impact factor: 4.074

9.  The Mouse Genome Database (MGD): integrating biology with the genome.

Authors:  Carol J Bult; Judith A Blake; Joel E Richardson; James A Kadin; Janan T Eppig; R M Baldarelli; K Barsanti; M Baya; J S Beal; W J Boddy; D W Bradt; D L Burkart; N E Butler; J Campbell; R Corey; L E Corbani; S Cousins; H Dene; H J Drabkin; K Frazer; D M Garippa; L H Glass; C W Goldsmith; P L Grant; B L King; M Lennon-Pierce; J Lewis; I Lu; C M Lutz; L J Maltais; L M McKenzie; D Miers; D Modrusan; L Ni; J E Ormsby; D Qi; S Ramachandran; T B K Reddy; D J Reed; R Sinclair; D R Shaw; C L Smith; P Szauter; B Taylor; P Vanden Borre; M Walker; L Washburn; I Witham; J Winslow; Y Zhu
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  A serial analysis of gene expression profile of the Alzheimer's disease Tg2576 mouse model.

Authors:  Amee J George; Lavinia Gordon; Tim Beissbarth; Irene Koukoulas; R M Damian Holsinger; Victoria Perreau; Roberto Cappai; Seong-Seng Tan; Colin L Masters; Hamish S Scott; Qiao-Xin Li
Journal:  Neurotox Res       Date:  2009-09-16       Impact factor: 3.911

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