Literature DB >> 11125071

RefSeq and LocusLink: NCBI gene-centered resources.

K D Pruitt1, D R Maglott.   

Abstract

Thousands of genes have been painstakingly identified and characterized a few genes at a time. Many thousands more are being predicted by large scale cDNA and genomic sequencing projects, with levels of evidence ranging from supporting mRNA sequence and comparative genomics to computing ab initio models. This, coupled with the burgeoning scientific literature, makes it critical to have a comprehensive directory for genes and reference sequences for key genomes. The NCBI provides two resources, LocusLink and RefSeq, to meet these needs. LocusLink organizes information around genes to generate a central hub for accessing gene-specific information for fruit fly, human, mouse, rat and zebrafish. RefSeq provides reference sequence standards for genomes, transcripts and proteins; human, mouse and rat mRNA RefSeqs, and their corresponding proteins, are discussed here. Together, RefSeq and LocusLink provide a non-redundant view of genes and other loci to support research on genes and gene families, variation, gene expression and genome annotation. Additional information about LocusLink and RefSeq is available at http://www.ncbi.nlm.nih.gov/LocusLink/.

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Year:  2001        PMID: 11125071      PMCID: PMC29787          DOI: 10.1093/nar/29.1.137

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

Review 1.  dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation.

Authors:  S T Sherry; M Ward; K Sirotkin
Journal:  Genome Res       Date:  1999-08       Impact factor: 9.043

2.  Making effective use of human genomic sequence data.

Authors:  W Jang; H C Chen; H Sicotte; G D Schuler
Journal:  Trends Genet       Date:  1999-07       Impact factor: 11.639

3.  Introducing RefSeq and LocusLink: curated human genome resources at the NCBI.

Authors:  K D Pruitt; K S Katz; H Sicotte; D R Maglott
Journal:  Trends Genet       Date:  2000-01       Impact factor: 11.639

4.  The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group.

Authors:  J A Blake; J T Eppig; J E Richardson; M T Davisson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  The FlyBase database of the Drosophila Genome Projects and community literature.

Authors: 
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

Review 6.  Zebrafish informatics and the ZFIN database.

Authors:  M Westerfield; E Doerry; A E Kirkpatrick; S A Douglas
Journal:  Methods Cell Biol       Date:  1999       Impact factor: 1.441

Review 7.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

8.  Guidelines for human gene nomenclature (1997). HUGO Nomenclature Committee.

Authors:  J A White; P J McAlpine; S Antonarakis; H Cann; J T Eppig; K Frazer; J Frezal; D Lancet; J Nahmias; P Pearson; J Peters; A Scott; H Scott; N Spurr; C Talbot; S Povey
Journal:  Genomics       Date:  1997-10-15       Impact factor: 5.736

9.  Sequence mapping by electronic PCR

Authors:  Gregory D Schuler
Journal:  Genome Res       Date:  1997-05       Impact factor: 9.043

10.  Online Mendelian Inheritance in Man (OMIM).

Authors:  A Hamosh; A F Scott; J Amberger; D Valle; V A McKusick
Journal:  Hum Mutat       Date:  2000       Impact factor: 4.878

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  334 in total

1.  Genome-wide detection of alternative splicing in expressed sequences of human genes.

Authors:  B Modrek; A Resch; C Grasso; C Lee
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

2.  HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project.

Authors:  Reiko Kikuno; Takahiro Nagase; Mina Waki; Osamu Ohara
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  JSNP: a database of common gene variations in the Japanese population.

Authors:  Mika Hirakawa; Toshihiro Tanaka; Yoichi Hashimoto; Masako Kuroda; Toshihisa Takagi; Yusuke Nakamura
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  The Gene Resource Locator: gene locus maps for transcriptome analysis.

Authors:  Toshihiko Honkura; Jun Ogasawara; Tomoyuki Yamada; Shinichi Morishita
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Authors:  Cathy H Wu; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Robert S Ledley; Kali C Lewis; Hans-Werner Mewes; Bruce C Orcutt; Baris E Suzek; Akira Tsugita; C R Vinayaka; Lai-Su L Yeh; Jian Zhang; Winona C Barker
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs.

Authors:  Yutaka Suzuki; Riu Yamashita; Kenta Nakai; Sumio Sugano
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  HOWDY: an integrated database system for human genome research.

Authors:  Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  Exploration of novel motifs derived from mouse cDNA sequences.

Authors:  Hideya Kawaji; Christian Schönbach; Yo Matsuo; Jun Kawai; Yasushi Okazaki; Yoshihide Hayashizaki; Hideo Matsuda
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

9.  Identification of a novel light intermediate chain (D2LIC) for mammalian cytoplasmic dynein 2.

Authors:  Paula M Grissom; Eugeni A Vaisberg; J Richard McIntosh
Journal:  Mol Biol Cell       Date:  2002-03       Impact factor: 4.138

Review 10.  Navigating the human transcriptome.

Authors:  R L Strausberg; G J Riggins
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

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