Literature DB >> 14681406

Genew: the Human Gene Nomenclature Database, 2004 updates.

Hester M Wain1, Michael J Lush, Fabrice Ducluzeau, Varsha K Khodiyar, Sue Povey.   

Abstract

Genew, the Human Gene Nomenclature Database http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/searchgenes.pl is the only resource that provides data for all human genes that have approved symbols. It is managed by the HUGO Gene Nomenclature Committee (HGNC) as a confidential database, containing over 22 000 records, 75% of which are represented online by a publicly searchable text file. Since 2002, there have been significant improvements to the Genew search engine. Additionally we have increased our capacity to analyse confidential sequence data, which has enabled us to manage the large numbers of gene symbol requests that we receive from the chromosome sequencing consortia.

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Mesh:

Year:  2004        PMID: 14681406      PMCID: PMC308806          DOI: 10.1093/nar/gkh072

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The InterPro Database, 2003 brings increased coverage and new features.

Authors:  Nicola J Mulder; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Phillip Bucher; Richard R Copley; Emmanuel Courcelle; Ujjwal Das; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Sam Griffiths-Jones; Daniel Haft; Nicola Harte; Nicolas Hulo; Daniel Kahn; Alexander Kanapin; Maria Krestyaninova; Rodrigo Lopez; Ivica Letunic; David Lonsdale; Ville Silventoinen; Sandra E Orchard; Marco Pagni; David Peyruc; Chris P Ponting; Jeremy D Selengut; Florence Servant; Christian J A Sigrist; Robert Vaughan; Evgueni M Zdobnov
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  IMGT, the international ImMunoGeneTics database.

Authors:  Marie-Paule Lefranc
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Ensembl 2002: accommodating comparative genomics.

Authors:  M Clamp; D Andrews; D Barker; P Bevan; G Cameron; Y Chen; L Clark; T Cox; J Cuff; V Curwen; T Down; R Durbin; E Eyras; J Gilbert; M Hammond; T Hubbard; A Kasprzyk; D Keefe; H Lehvaslaiho; V Iyer; C Melsopp; E Mongin; R Pettett; S Potter; A Rust; E Schmidt; S Searle; G Slater; J Smith; W Spooner; A Stabenau; J Stalker; E Stupka; A Ureta-Vidal; I Vastrik; E Birney
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  The EMBL Nucleotide Sequence Database: major new developments.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  Genew: the human gene nomenclature database.

Authors:  Hester M Wain; Michael Lush; Fabrice Ducluzeau; Sue Povey
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE.

Authors:  Marilyn Safran; Vered Chalifa-Caspi; Orit Shmueli; Tsviya Olender; Michal Lapidot; Naomi Rosen; Michael Shmoish; Yakov Peter; Gustavo Glusman; Ester Feldmesser; Avital Adato; Inga Peter; Miriam Khen; Tal Atarot; Yoram Groner; Doron Lancet
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  Database resources of the National Center for Biotechnology.

Authors:  David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  MGD: the Mouse Genome Database.

Authors:  Judith A Blake; Joel E Richardson; Carol J Bult; Jim A Kadin; Janan T Eppig
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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  59 in total

1.  Characterization of Alu and recombination-associated motifs mediating a large homozygous SPG7 gene rearrangement causing hereditary spastic paraplegia.

Authors:  Eva López; Carlos Casasnovas; Javier Giménez; Antoni Matilla-Dueñas; Ivelisse Sánchez; Víctor Volpini
Journal:  Neurogenetics       Date:  2014-11-16       Impact factor: 2.660

Review 2.  An overview of Ensembl.

Authors:  Ewan Birney; T Daniel Andrews; Paul Bevan; Mario Caccamo; Yuan Chen; Laura Clarke; Guy Coates; James Cuff; Val Curwen; Tim Cutts; Thomas Down; Eduardo Eyras; Xose M Fernandez-Suarez; Paul Gane; Brian Gibbins; James Gilbert; Martin Hammond; Hans-Rudolf Hotz; Vivek Iyer; Kerstin Jekosch; Andreas Kahari; Arek Kasprzyk; Damian Keefe; Stephen Keenan; Heikki Lehvaslaiho; Graham McVicker; Craig Melsopp; Patrick Meidl; Emmanuel Mongin; Roger Pettett; Simon Potter; Glenn Proctor; Mark Rae; Steve Searle; Guy Slater; Damian Smedley; James Smith; Will Spooner; Arne Stabenau; James Stalker; Roy Storey; Abel Ureta-Vidal; K Cara Woodwark; Graham Cameron; Richard Durbin; Anthony Cox; Tim Hubbard; Michele Clamp
Journal:  Genome Res       Date:  2004-04-12       Impact factor: 9.043

3.  HCOP: the HGNC comparison of orthology predictions search tool.

Authors:  Mathew W Wright; Tina A Eyre; Michael J Lush; Sue Povey; Elspeth A Bruford
Journal:  Mamm Genome       Date:  2005-11-11       Impact factor: 2.957

4.  Dynamic role of postsynaptic caspase-3 and BIRC4 in zebra finch song-response habituation.

Authors:  Graham R Huesmann; David F Clayton
Journal:  Neuron       Date:  2006-12-21       Impact factor: 17.173

5.  Standard mutation nomenclature in molecular diagnostics: practical and educational challenges.

Authors:  Shuji Ogino; Margaret L Gulley; Johan T den Dunnen; Robert B Wilson
Journal:  J Mol Diagn       Date:  2007-02       Impact factor: 5.568

6.  Hereditary spastic paraplegia caused by the novel mutation 1047insC in the SPG7 gene.

Authors:  Charalampos Tzoulis; Paola S Denora; Filippo M Santorelli; Laurence A Bindoff
Journal:  J Neurol       Date:  2008-06-23       Impact factor: 4.849

7.  Identifying gene-disease associations using centrality on a literature mined gene-interaction network.

Authors:  Arzucan Ozgür; Thuy Vu; Günes Erkan; Dragomir R Radev
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

Review 8.  Comparative molecular biological analysis of membrane transport genes in organisms.

Authors:  Toshifumi Nagata; Shigemi Iizumi; Kouji Satoh; Shoshi Kikuchi
Journal:  Plant Mol Biol       Date:  2008-02-22       Impact factor: 4.076

9.  Perturbation of interaction networks for application to cancer therapy.

Authors:  Adrian P Quayle; Asim S Siddiqui; Steven J M Jones
Journal:  Cancer Inform       Date:  2007-04-01

10.  Automated recognition of brain region mentions in neuroscience literature.

Authors:  Leon French; Suzanne Lane; Lydia Xu; Paul Pavlidis
Journal:  Front Neuroinform       Date:  2009-09-01       Impact factor: 4.081

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