Literature DB >> 11752269

The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Judith A Blake1, Joel E Richardson, Carol J Bult, Jim A Kadin, Janan T Eppig.   

Abstract

The Mouse Genome Database (MGD) is the community database resource for the laboratory mouse, a key model organism for interpreting the human genome and for understanding human biology and disease (http://www.informatics.jax.org). MGD strives to provide a highly curated, highly integrated information resource that not only includes the consensus view of current knowledge about the mouse, but also provides comparative genomic information particularly for human and rat genomes. MGD includes extensive information about mouse genes, supporting all gene attribute assertions with experimental data, statements of evidence and citation. Detailed information about alleles and mouse mutants includes genotype, molecular variant and phenotype descriptions. Extensive collaboration with other data providers such as NCBI, RIKEN and SWISS-PROT provides standardization of gene:sequence associations and robust interconnections between large information systems based on shared sequence curation. Recent integration of large datasets of mouse full-length cDNAs and radiation-hybrid mapped ESTs, the continued development and use of extensive structured vocabularies and the expansion of the representation of phenotypes highlight this year's developments.

Entities:  

Mesh:

Year:  2002        PMID: 11752269      PMCID: PMC99116          DOI: 10.1093/nar/30.1.113

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

3.  Program description: Strategies for biological annotation of mammalian systems: implementing gene ontologies in mouse genome informatics.

Authors:  D P Hill; A P Davis; J E Richardson; J P Corradi; M Ringwald; J T Eppig; J A Blake
Journal:  Genomics       Date:  2001-05-15       Impact factor: 5.736

4.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.

Authors:  Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Rat Genome Database (RGD): mapping disease onto the genome.

Authors:  Simon Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne Kwitek; Janan Eppig; Lois Maltais; Donna Maglott; Greg Schuler; Howard Jacob; Peter J Tonellato
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  Functional annotation of a full-length mouse cDNA collection.

Authors:  J Kawai; A Shinagawa; K Shibata; M Yoshino; M Itoh; Y Ishii; T Arakawa; A Hara; Y Fukunishi; H Konno; J Adachi; S Fukuda; K Aizawa; M Izawa; K Nishi; H Kiyosawa; S Kondo; I Yamanaka; T Saito; Y Okazaki; T Gojobori; H Bono; T Kasukawa; R Saito; K Kadota; H Matsuda; M Ashburner; S Batalov; T Casavant; W Fleischmann; T Gaasterland; C Gissi; B King; H Kochiwa; P Kuehl; S Lewis; Y Matsuo; I Nikaido; G Pesole; J Quackenbush; L M Schriml; F Staubli; R Suzuki; M Tomita; L Wagner; T Washio; K Sakai; T Okido; M Furuno; H Aono; R Baldarelli; G Barsh; J Blake; D Boffelli; N Bojunga; P Carninci; M F de Bonaldo; M J Brownstein; C Bult; C Fletcher; M Fujita; M Gariboldi; S Gustincich; D Hill; M Hofmann; D A Hume; M Kamiya; N H Lee; P Lyons; L Marchionni; J Mashima; J Mazzarelli; P Mombaerts; P Nordone; B Ring; M Ringwald; I Rodriguez; N Sakamoto; H Sasaki; K Sato; C Schönbach; T Seya; Y Shibata; K F Storch; H Suzuki; K Toyo-oka; K H Wang; C Weitz; C Whittaker; L Wilming; A Wynshaw-Boris; K Yoshida; Y Hasegawa; H Kawaji; S Kohtsuki; Y Hayashizaki
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

8.  Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database.

Authors:  C J Bult; D M Krupke; D Näf; J P Sundberg; J T Eppig
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  The Mouse Genome Database (MGD): integration nexus for the laboratory mouse.

Authors:  J A Blake; J T Eppig; J E Richardson; C J Bult; J A Kadin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

10.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  10 in total
  47 in total

1.  A literature-based method for assessing the functional coherence of a gene group.

Authors:  Soumya Raychaudhuri; Russ B Altman
Journal:  Bioinformatics       Date:  2003-02-12       Impact factor: 6.937

2.  The transcriptional activity of human Chromosome 22.

Authors:  John L Rinn; Ghia Euskirchen; Paul Bertone; Rebecca Martone; Nicholas M Luscombe; Stephen Hartman; Paul M Harrison; F Kenneth Nelson; Perry Miller; Mark Gerstein; Sherman Weissman; Michael Snyder
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

3.  Male mouse recombination maps for each autosome identified by chromosome painting.

Authors:  Lutz Froenicke; Lorinda K Anderson; Johannes Wienberg; Terry Ashley
Journal:  Am J Hum Genet       Date:  2002-11-12       Impact factor: 11.025

4.  The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.

Authors:  Evelyn Camon; Michele Magrane; Daniel Barrell; David Binns; Wolfgang Fleischmann; Paul Kersey; Nicola Mulder; Tom Oinn; John Maslen; Anthony Cox; Rolf Apweiler
Journal:  Genome Res       Date:  2003-03-12       Impact factor: 9.043

5.  ARED 2.0: an update of AU-rich element mRNA database.

Authors:  Tala Bakheet; Bryan R G Williams; Khalid S A Khabar
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  RTPrimerDB: the real-time PCR primer and probe database.

Authors:  Filip Pattyn; Frank Speleman; Anne De Paepe; Jo Vandesompele
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data.

Authors:  Maximilian Diehn; Gavin Sherlock; Gail Binkley; Heng Jin; John C Matese; Tina Hernandez-Boussard; Christian A Rees; J Michael Cherry; David Botstein; Patrick O Brown; Ash A Alizadeh
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

8.  Phosphoregulators: protein kinases and protein phosphatases of mouse.

Authors:  Alistair R R Forrest; Timothy Ravasi; Darrin Taylor; Thomas Huber; David A Hume; Sean Grimmond
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

9.  Genetic loci that control the size of laser-induced choroidal neovascularization.

Authors:  Kei Nakai; Michael S Rogers; Takashi Baba; Taisaku Funakoshi; Amy E Birsner; Dema S Luyindula; Robert J D'Amato
Journal:  FASEB J       Date:  2009-02-23       Impact factor: 5.191

10.  The Mouse Genome Database (MGD): integrating biology with the genome.

Authors:  Carol J Bult; Judith A Blake; Joel E Richardson; James A Kadin; Janan T Eppig; R M Baldarelli; K Barsanti; M Baya; J S Beal; W J Boddy; D W Bradt; D L Burkart; N E Butler; J Campbell; R Corey; L E Corbani; S Cousins; H Dene; H J Drabkin; K Frazer; D M Garippa; L H Glass; C W Goldsmith; P L Grant; B L King; M Lennon-Pierce; J Lewis; I Lu; C M Lutz; L J Maltais; L M McKenzie; D Miers; D Modrusan; L Ni; J E Ormsby; D Qi; S Ramachandran; T B K Reddy; D J Reed; R Sinclair; D R Shaw; C L Smith; P Szauter; B Taylor; P Vanden Borre; M Walker; L Washburn; I Witham; J Winslow; Y Zhu
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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