Literature DB >> 11125060

The Mouse Gene Expression Database (GXD).

M Ringwald1, J T Eppig, D A Begley, J P Corradi, I J McCright, T F Hayamizu, D P Hill, J A Kadin, J E Richardson.   

Abstract

The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse. By combining the different types of expression data, GXD aims to provide increasingly complete information about the expression profiles of genes in different mouse strains and mutants, thus enabling valuable insights into the molecular networks that underlie normal development and disease. GXD is integrated with the Mouse Genome Database (MGD). Extensive interconnections with sequence databases and with databases from other species, and the development and use of shared controlled vocabularies extend GXD's utility for the analysis of gene expression information. GXD is accessible through the Mouse Genome Informatics web site at http://www.informatics.jax.org/ or directly at http://www.informatics.jax.org/menus/expression_menu. shtml.

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Year:  2001        PMID: 11125060      PMCID: PMC29814          DOI: 10.1093/nar/29.1.98

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams.

Authors:  Y Tateno; S Miyazaki; M Ota; H Sugawara; T Gojobori
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The EMBL nucleotide sequence database.

Authors:  W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  GXD: integrated access to gene expression data for the laboratory mouse.

Authors:  M Ringwald; J T Eppig; J E Richardson
Journal:  Trends Genet       Date:  2000-04       Impact factor: 11.639

5.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 6.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

7.  The Mouse Genome Database (MGD): integration nexus for the laboratory mouse.

Authors:  J A Blake; J T Eppig; J E Richardson; C J Bult; J A Kadin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  The mouse atlas and graphical gene-expression database

Authors: 
Journal:  Semin Cell Dev Biol       Date:  1997-10       Impact factor: 7.727

9.  A three-dimensional model of the mouse at embryonic day 9.

Authors:  R M Brune; J B Bard; C Dubreuil; E Guest; W Hill; M Kaufman; M Stark; D Davidson; R A Baldock
Journal:  Dev Biol       Date:  1999-12-15       Impact factor: 3.582

10.  A database for mouse development.

Authors:  M Ringwald; R Baldock; J Bard; M Kaufman; J T Eppig; J E Richardson; J H Nadeau; D Davidson
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

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  25 in total

1.  Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

Authors:  David P Hill; Judith A Blake; Joel E Richardson; Martin Ringwald
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  CnidBase: The Cnidarian Evolutionary Genomics Database.

Authors:  Joseph F Ryan; John R Finnerty
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.

Authors:  Piero Carninci; Kazunori Waki; Toshiyuki Shiraki; Hideaki Konno; Kazuhiro Shibata; Masayoshi Itoh; Katsunori Aizawa; Takahiro Arakawa; Yoshiyuki Ishii; Daisuke Sasaki; Hidemasa Bono; Shinji Kondo; Yuichi Sugahara; Rintaro Saito; Naoki Osato; Shiro Fukuda; Kenjiro Sato; Akira Watahiki; Tomoko Hirozane-Kishikawa; Mari Nakamura; Yuko Shibata; Ayako Yasunishi; Noriko Kikuchi; Atsushi Yoshiki; Moriaki Kusakabe; Stefano Gustincich; Kirk Beisel; William Pavan; Vassilis Aidinis; Akira Nakagawara; William A Held; Hiroo Iwata; Tomohiro Kono; Hiromitsu Nakauchi; Paul Lyons; Christine Wells; David A Hume; Michela Fagiolini; Takao K Hensch; Michelle Brinkmeier; Sally Camper; Junji Hirota; Peter Mombaerts; Masami Muramatsu; Yasushi Okazaki; Jun Kawai; Yoshihide Hayashizaki
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

Review 4.  Anatomics: the intersection of anatomy and bioinformatics.

Authors:  Jonathan B L Bard
Journal:  J Anat       Date:  2005-01       Impact factor: 2.610

5.  The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Authors:  Judith A Blake; Joel E Richardson; Carol J Bult; Jim A Kadin; Janan T Eppig
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals.

Authors:  Susan A Elmore; Robert Cardiff; Mark F Cesta; Georgios V Gkoutos; Robert Hoehndorf; Charlotte M Keenan; Colin McKerlie; Paul N Schofield; John P Sundberg; Jerrold M Ward
Journal:  ILAR J       Date:  2018-12-01

7.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  Towards the use of argumentation in bioinformatics: a gene expression case study.

Authors:  Kenneth McLeod; Albert Burger
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

10.  Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.

Authors:  James Carson; Tao Ju; Musodiq Bello; Christina Thaller; Joe Warren; Ioannis A Kakadiaris; Wah Chiu; Gregor Eichele
Journal:  Methods       Date:  2009-08-19       Impact factor: 3.608

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