Literature DB >> 12059602

Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect.

K Achterhold1, C Keppler, A Ostermann, U van Bürck, W Sturhahn, E E Alp, F G Parak.   

Abstract

The phonon-assisted Mössbauer effect is used to determine the partial phonon density of states of the iron within the active center of deoxymyoglobin, carboxymyoglobin, and dry and wet metmyoglobin between 40 and 300 K. Between 0 and 1 meV the iron density of states increases quadratically with the energy, as in a Debye solid. Mean sound velocities are extracted from this slope. Between 1 and 3 meV a nearly quadratic "Debye-like" increase follows due to the similar strength of intermolecular and intramolecular forces. Above 3 meV, optical vibrations are characteristic for the iron-ligand conformation. The overall mean square displacements of the heme iron atom obtained from the density of states agree well with the values of Mössbauer absorption experiments below 180 K. In the physiological temperature regime the data confirm the existence of harmonic vibrations in addition to the protein specific dynamics measured by Mössbauer absorption. In the Debye energy regime the mean square displacement of the iron is in agreement with that of the hydrogens measured by incoherent neutron scattering demonstrating the global character of these modes. At higher energies the vibration of the heavy iron atom at 33 meV in metmyoglobin is as large as that of the lightweight hydrogens at that energy. A freeze dried, rehydrated (h=0.38 g H2O/g protein) metmyoglobin sample shows an excess of states above the Debye law between 1 and 3 meV, similar to neutron scattering experiments. The room temperature density of states below 3 meV exhibit an increase of the density compared to the low temperature data, which can be interpreted as mode softening.

Entities:  

Year:  2002        PMID: 12059602     DOI: 10.1103/PhysRevE.65.051916

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  15 in total

1.  Non-Gaussian statistics of the vibrational fluctuations of myoglobin.

Authors:  J A Tuszyński; E J Carpenter; J M Dixon; Y Engelborghs
Journal:  Eur Biophys J       Date:  2003-09-19       Impact factor: 1.733

2.  Protein dynamics of a beta-sheet protein.

Authors:  Marius Schmidt; Klaus Achterhold; Valeriy Prusakov; Fritz G Parak
Journal:  Eur Biophys J       Date:  2009-03-07       Impact factor: 1.733

3.  A physical picture of protein dynamics and conformational changes.

Authors:  Fritz G Parak; Klaus Achterhold; Simonetta Croci; Marius Schmidt
Journal:  J Biol Phys       Date:  2008-08-27       Impact factor: 1.365

4.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

5.  Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Authors:  Bogdan M Leu; J Timothy Sage; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem Solids       Date:  2005-12       Impact factor: 3.995

6.  A wave-mechanical model of incoherent quasielastic scattering in complex systems.

Authors:  Hans Frauenfelder; Paul W Fenimore; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

7.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

8.  Predicting Nuclear Resonance Vibrational Spectra of [Fe(OEP)(NO)].

Authors:  Qian Peng; Jeffrey W Pavlik; W Robert Scheidt; Olaf Wiest
Journal:  J Chem Theory Comput       Date:  2011-11-29       Impact factor: 6.006

9.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

10.  Intermolecular dynamics in crystalline iron octaethylporphyrin (FeOEP).

Authors:  Valeriia Starovoitova; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem B       Date:  2008-09-13       Impact factor: 2.991

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