Literature DB >> 18793016

Intermolecular dynamics in crystalline iron octaethylporphyrin (FeOEP).

Valeriia Starovoitova1, Graeme R A Wyllie, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp, Stephen M Durbin.   

Abstract

The new technique of nuclear resonance vibrational spectroscopy (NRVS) has increased the range and quality of dynamical data from Fe-containing molecules that when combined with Raman and infrared spectroscopies impose stricter constraints on normal mode simulations, especially at lower frequencies. Going beyond the usual single molecule approximation, a classical normal-mode analysis that includes intermolecular coupling and the full crystalline symmetry is found to produce a better fit with fewer free parameters for the heme compound iron octaethylporphyrin (FeOEP), using NRVS data from polycrystalline material. Off-diagonal force constants were completely unnecessary, indicating that their role in previous single molecule fits was just to emulate intermolecular coupling. Sound velocities deduced from the calculated phonon dispersion curves are compared to NRVS measurements to further constrain the intermolecular force constants. The NRVS data by themselves are insufficient to rigorously determine all unknown force constants for molecules of this size, but the improved crystal model fit indicates the necessity of including intermolecular interactions for normal-mode analyses.

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Year:  2008        PMID: 18793016      PMCID: PMC2823074          DOI: 10.1021/jp806215r

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect.

Authors:  K Achterhold; C Keppler; A Ostermann; U van Bürck; W Sturhahn; E E Alp; F G Parak
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-17

2.  Intermolecular interactions in solid benzene.

Authors:  G J Kearley; M R Johnson; J Tomkinson
Journal:  J Chem Phys       Date:  2006-01-28       Impact factor: 3.488

Review 3.  Nuclear resonance vibrational spectroscopy--NRVS.

Authors:  W Robert Scheidt; Stephen M Durbin; J Timothy Sage
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

4.  Vibrational spectroscopy and normal-mode analysis of Fe(II) octaethylporphyrin.

Authors:  Valeriia Starovoitova; Timo E Budarz; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; E W Prohofsky; Stephen M Durbin
Journal:  J Phys Chem B       Date:  2006-07-06       Impact factor: 2.991

5.  Iron normal mode dynamics in (nitrosyl)iron(II)tetraphenylporphyrin from X-ray nuclear resonance data.

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

6.  Direct determination of the complete set of iron normal modes in a porphyrin-imidazole model for carbonmonoxy-heme proteins: [Fe(TPP)(CO)(1-MeIm)].

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Mary K Ellison; Arne Roth; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

  6 in total
  2 in total

1.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

Review 2.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

  2 in total

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