Literature DB >> 14504840

Non-Gaussian statistics of the vibrational fluctuations of myoglobin.

J A Tuszyński1, E J Carpenter, J M Dixon, Y Engelborghs.   

Abstract

Experiments on the dynamics of vibrational fluctuations in myoglobin revealed an interesting behavioral cross-over occurring in the range 180-200 K. In this temperature range the mean square displacement of atomic positions versus temperature sharply increases its slope, indicating the dissociation of CO from the heme group. In this paper we develop a theoretical model that provides a framework for the quantitative description of this phenomenon. The basis of our calculations is an assumption of an effective potential with multiple local minima. In particular, we consider a quartic potential in place of the simple quadratic. We then use non-Gaussian statistics to obtain a relationship between the mean square displacement and model parameters. We compare our model to published experimental data and show that it can describe the data set using physically meaningful parameters which are fitted to the experimental data. In the process we verify the Gaussian approximation's applicability only to the low-temperature régime. In the high-temperature limit, however, deviations from the Gaussian approximation are due to the double-well nature of our effective potential. We find that the published datasets showing the thermal transition display the qualitative trends predicted by appropriate algebraic approximations to our predicted myoglobin behavior.

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Year:  2003        PMID: 14504840     DOI: 10.1007/s00249-003-0351-6

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  11 in total

1.  Molecular dynamics simulation shows large volume fluctuations of proteins.

Authors:  F Tama; O Miyashita; A Kitao; N Go
Journal:  Eur Biophys J       Date:  2000       Impact factor: 1.733

2.  Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect.

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-17

3.  Non-Gaussian approach to critical fluctuations in the Landau-Ginzburg model and finite-size scaling.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-04-01

4.  Harmonic behavior of trehalose-coated carbon-monoxy-myoglobin at high temperature.

Authors:  L Cordone; M Ferrand; E Vitrano; G Zaccai
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

5.  Non-Gaussian models for critical fluctuations.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-03-01

6.  Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering.

Authors:  M Ferrand; A J Dianoux; W Petry; G Zaccaï
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

7.  Protein hydration elucidated by molecular dynamics simulation.

Authors:  P J Steinbach; B R Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

8.  Hydrated myoglobin's anharmonic fluctuations are not primarily due to dihedral transitions.

Authors:  P J Steinbach; B R Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

9.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

10.  Ligand binding and conformational motions in myoglobin.

Authors:  A Ostermann; R Waschipky; F G Parak; G U Nienhaus
Journal:  Nature       Date:  2000-03-09       Impact factor: 49.962

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