Literature DB >> 25136125

A wave-mechanical model of incoherent quasielastic scattering in complex systems.

Hans Frauenfelder1, Paul W Fenimore2, Robert D Young3.   

Abstract

Quasielastic incoherent neutron scattering (QENS) is an important tool for the exploration of the dynamics of complex systems such as biomolecules, liquids, and glasses. The dynamics is reflected in the energy spectra of the scattered neutrons. Conventionally these spectra are decomposed into a narrow elastic line and a broad quasielastic band. The band is interpreted as being caused by Doppler broadening due to spatial motion of the target molecules. We propose a quantum-mechanical model in which there is no separate elastic line. The quasielastic band is composed of sharp lines with twice the natural line width, shifted from the center by a random walk of the protein in the free-energy landscape of the target molecule. The walk is driven by vibrations and by external fluctuations. We first explore the model with the Mössbauer effect. In the subsequent application to QENS we treat the incoming neutron as a de Broglie wave packet. While the wave packet passes the protons in the protein and the hydration shell it exchanges energy with the protein during the passage time of about 100 ns. The energy exchange broadens the ensemble spectrum. Because the exchange involves the free-energy landscape of the protein, the QENS not only provides insight into the protein dynamics, but it may also illuminate the free-energy landscape of the protein-solvent system.

Keywords:  neutron wave packet; protein free-energy landscape; quasielastic neutron scattering

Mesh:

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Year:  2014        PMID: 25136125      PMCID: PMC4156732          DOI: 10.1073/pnas.1411781111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

2.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

3.  Scattering of quantum wave packets by shallow potential islands: a quantum lens.

Authors:  Arseni Goussev; Klaus Richter
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-05-28

4.  Dynamics and the free-energy landscape of proteins, explored with the Mössbauer effect and quasi-elastic neutron scattering.

Authors:  Hans Frauenfelder; Robert D Young; Paul W Fenimore
Journal:  J Phys Chem B       Date:  2013-09-12       Impact factor: 2.991

5.  Nanosecond Stokes shift dynamics, dynamical transition, and gigantic reorganization energy of hydrated heme proteins.

Authors:  Dmitry V Matyushov
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

6.  Structural fluctuations in glass-forming liquids: Mössbauer spectroscopy on iron in glycerol.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-02-01

7.  Matter waves at a vibrating surface: Transition from quantum-mechanical to classical behavior.

Authors: 
Journal:  Phys Rev A       Date:  1996-01       Impact factor: 3.140

8.  Variations on a theme by Debye and Waller: from simple crystals to proteins.

Authors:  A E García; J A Krumhansl; H Frauenfelder
Journal:  Proteins       Date:  1997-10

Review 9.  What vibrations tell us about proteins.

Authors:  Andreas Barth; Christian Zscherp
Journal:  Q Rev Biophys       Date:  2002-11       Impact factor: 5.318

10.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

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  6 in total

1.  Time domain versus energy domain neutron scattering analysis of protein dynamics.

Authors:  Wolfgang Doster
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-12       Impact factor: 11.205

2.  The role of momentum transfer during incoherent neutron scattering is explained by the energy landscape model.

Authors:  Hans Frauenfelder; Robert D Young; Paul W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

3.  Franck-Condon picture of incoherent neutron scattering.

Authors:  Gerald R Kneller
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-30       Impact factor: 11.205

4.  No case against scattering theory.

Authors:  Joachim Wuttke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-20       Impact factor: 11.205

5.  Powdered G-Protein-Coupled Receptors.

Authors:  Suchithranga M D C Perera; Udeep Chawla; Michael F Brown
Journal:  J Phys Chem Lett       Date:  2016-10-12       Impact factor: 6.475

6.  Reply to Doster: Franck-Condon and Van Hove formulation of quasielastic neutron scattering from complex systems.

Authors:  Gerald R Kneller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-12       Impact factor: 11.205

  6 in total

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