Literature DB >> 11964152

Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region.

Jérôme Bredin1, Nathalie Saint, Monique Malléa, Emmanuelle Dé, Gérard Molle, Jean-Marie Pagès, Valérie Simonet.   

Abstract

The Escherichia coli OmpF pore is governed by an internal constriction consisting of the negatively charged loop 3 folded into the lumen and the positively charged barrel wall located on the opposite side across the pore, 'anti-loop 3'. To investigate the role of anti-loop 3 in solute diffusion, four site-directed mutations, K16A, K16D, R132A and R132D, were introduced into this eyelet region. The mutant porins were expressed efficiently and inserted into the outer membrane, and the thermal stabilities of the resulting trimers were determined. Diffusion of cefepime, a recently developed cephalosporin, was analysed in vivo. In vitro studies were performed on purified porins reconstituted in planar lipid bilayers to measure conductance, selectivity and voltage closure, as well as in liposomes for patch-clamp and sugar-swelling assays. All substitutions modified the ion-channel parameters, and minor conformational changes in the OmpF eyelet region were predicted from modelling studies. Our data show that Lys-16, and to a lesser extent Arg-132, are involved in voltage-gating and pore selectivity via their side-chain charges. Substitution K16D, which causes a severe decrease in critical voltage (V(c)), may generate a channel susceptible to membrane potential, which perturbs cefepime diffusion. These results suggest that the Lys-16 residue plays an important role in the process of diffusion through the OmpF lumen.

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Year:  2002        PMID: 11964152      PMCID: PMC1222504          DOI: 10.1042/0264-6021:3630521

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  43 in total

1.  A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels.

Authors:  W Im; S Seefeld; B Roux
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

2.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

3.  Molecular basis for the polyamine-ompF porin interactions: inhibitor and mutant studies.

Authors:  R Iyer; Z Wu; P M Woster; A H Delcour
Journal:  J Mol Biol       Date:  2000-04-07       Impact factor: 5.469

4.  Matrix protein from Escherichia coli outer membranes forms voltage-controlled channels in lipid bilayers.

Authors:  H Schindler; J P Rosenbusch
Journal:  Proc Natl Acad Sci U S A       Date:  1978-08       Impact factor: 11.205

5.  Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties.

Authors:  M Montal; P Mueller
Journal:  Proc Natl Acad Sci U S A       Date:  1972-12       Impact factor: 11.205

6.  In vivo modification of porin activity conferring antibiotic resistance to Enterobacter aerogenes.

Authors:  J Chevalier; J M Pagès; M Malléa
Journal:  Biochem Biophys Res Commun       Date:  1999-12-09       Impact factor: 3.575

7.  Normal precursors of periplasmic proteins accumulated in the cytoplasm are not exported post-translationally in Escherichia coli.

Authors:  J M Pages; J Anba; A Bernadac; H Shinagawa; A Nakata; C Lazdunski
Journal:  Eur J Biochem       Date:  1984-09-17

8.  Porin channels in Escherichia coli: studies with liposomes reconstituted from purified proteins.

Authors:  H Nikaido; E Y Rosenberg
Journal:  J Bacteriol       Date:  1983-01       Impact factor: 3.490

9.  Diffusion of beta-lactam antibiotics through the porin channels of Escherichia coli K-12.

Authors:  F Yoshimura; H Nikaido
Journal:  Antimicrob Agents Chemother       Date:  1985-01       Impact factor: 5.191

10.  Identification of positively charged residues of FomA porin of Fusobacterium nucleatum which are important for pore function.

Authors:  H Kleivdal; R Benz; J Tommassen; H B Jensen
Journal:  Eur J Biochem       Date:  1999-03
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  33 in total

1.  Residue ionization and ion transport through OmpF channels.

Authors:  Ekaterina M Nestorovich; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Omp35, a new Enterobacter aerogenes porin involved in selective susceptibility to cephalosporins.

Authors:  Charléric Bornet; Nathalie Saint; Lilia Fetnaci; Myrielle Dupont; Anne Davin-Régli; Claude Bollet; Jean-Marie Pagès
Journal:  Antimicrob Agents Chemother       Date:  2004-06       Impact factor: 5.191

3.  Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction.

Authors:  Maarten Vrouenraets; Jenny Wierenga; Wim Meijberg; Henk Miedema
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

4.  The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.

Authors:  Sameer Varma; See-Wing Chiu; Eric Jakobsson
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

5.  Channel activity of OmpF monitored in nano-BLMs.

Authors:  Eva K Schmitt; Maarten Vrouenraets; Claudia Steinem
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

6.  Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF.

Authors:  Henk Miedema; Maarten Vrouenraets; Jenny Wierenga; Bob Eisenberg; Tilman Schirmer; Arnaud Baslé; Wim Meijberg
Journal:  Eur Biophys J       Date:  2006-07-21       Impact factor: 1.733

7.  Permeation rates of penicillins indicate that Escherichia coli porins function principally as nonspecific channels.

Authors:  Seiji Kojima; Hiroshi Nikaido
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

8.  The ionization state of D37 in E. coli porin OmpF and the nature of conductance fluctuations in D37 mutants.

Authors:  Maarten Vrouenraets; Henk Miedema
Journal:  Eur Biophys J       Date:  2010-06-04       Impact factor: 1.733

9.  Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF.

Authors:  Antonio Alcaraz; Ekaterina M Nestorovich; Marcel Aguilella-Arzo; Vicente M Aguilella; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

10.  Functions of the periplasmic loop of the porin MspA from Mycobacterium smegmatis.

Authors:  Jason Huff; Mikhail Pavlenok; Suja Sukumaran; Michael Niederweis
Journal:  J Biol Chem       Date:  2009-02-10       Impact factor: 5.157

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