Literature DB >> 16858566

Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF.

Henk Miedema1, Maarten Vrouenraets, Jenny Wierenga, Bob Eisenberg, Tilman Schirmer, Arnaud Baslé, Wim Meijberg.   

Abstract

A recent molecular dynamics study questioned the protonation state and physiological role of aspartate 127 (D127) of E. coli porin OmpF. To address that question we isolated two OmpF mutants with D127 either neutralized (D127N) or replaced by a positively charged lysine (D127K). The charge state of the residue at position 127 has clear effects on both conductance and selectivity. The D127K but not the D127N mutant expresses resilient conductance and selectivity fluctuations. These fluctuations reflect, we think, either changes in the ionization state of K127 and/or transitions between unstable subconformations as induced by the electrostatic repulsion between two positively charged residues, K127 and the nearby R167. Our results slightly favor the view that in WT OmpF residue D127 is deprotonated. As for the role of D127 in OmpF functionality, the gating of both mutants shows very similar sensitivity toward voltage as WT OmpF. Moreover, the current fluctuations of the D127K mutant were observed also in the absence of an applied electric field. We therefore dismiss D127 as a key residue in the control mechanism of the voltage-dependent gating of OmpF.

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Year:  2006        PMID: 16858566     DOI: 10.1007/s00249-006-0084-4

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  34 in total

1.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

2.  Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region.

Authors:  Jérôme Bredin; Nathalie Saint; Monique Malléa; Emmanuelle Dé; Gérard Molle; Jean-Marie Pagès; Valérie Simonet
Journal:  Biochem J       Date:  2002-05-01       Impact factor: 3.857

Review 3.  Solute uptake through general porins.

Authors:  Anne H Delcour
Journal:  Front Biosci       Date:  2003-05-01

4.  Residue ionization and ion transport through OmpF channels.

Authors:  Ekaterina M Nestorovich; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

5.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

6.  The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.

Authors:  Sameer Varma; See-Wing Chiu; Eric Jakobsson
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

7.  Structural and functional characterization of OmpF porin mutants selected for larger pore size. II. Functional characterization.

Authors:  N Saint; K L Lou; C Widmer; M Luckey; T Schirmer; J P Rosenbusch
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

8.  Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF.

Authors:  Antonio Alcaraz; Ekaterina M Nestorovich; Marcel Aguilella-Arzo; Vicente M Aguilella; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

9.  Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

10.  Deletions of single extracellular loops affect pH sensitivity, but not voltage dependence, of the Escherichia coli porin OmpF.

Authors:  Arnaud Baslé; Randa Qutub; Mahsa Mehrazin; Jamie Wibbenmeyer; Anne H Delcour
Journal:  Protein Eng Des Sel       Date:  2004-10-06       Impact factor: 1.650

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  7 in total

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Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

2.  Ions and inhibitors in the binding site of HIV protease: comparison of Monte Carlo simulations and the linearized Poisson-Boltzmann theory.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Dirk Gillespie; Bob Eisenberg; Michael K Gilson
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

3.  Engineering channels: atomic biology.

Authors:  Bob Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-28       Impact factor: 11.205

4.  Understanding ion conductance on a molecular level: an all-atom modeling of the bacterial porin OmpF.

Authors:  Soroosh Pezeshki; Catalin Chimerel; Andrey N Bessonov; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

5.  The ionization state of D37 in E. coli porin OmpF and the nature of conductance fluctuations in D37 mutants.

Authors:  Maarten Vrouenraets; Henk Miedema
Journal:  Eur Biophys J       Date:  2010-06-04       Impact factor: 1.733

6.  Elucidating in vivo structural dynamics in integral membrane protein by hydroxyl radical footprinting.

Authors:  Yi Zhu; Tiannan Guo; Jung Eun Park; Xin Li; Wei Meng; Arnab Datta; Marshall Bern; Sai Kiang Lim; Siu Kwan Sze
Journal:  Mol Cell Proteomics       Date:  2009-05-26       Impact factor: 5.911

7.  SecY-mediated quality control prevents the translocation of non-gated porins.

Authors:  Sebastian Jung; Verian Bader; Ana Natriashvili; Hans-Georg Koch; Konstanze F Winklhofer; Jörg Tatzelt
Journal:  Sci Rep       Date:  2020-10-01       Impact factor: 4.379

  7 in total

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