Literature DB >> 16299071

Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction.

Maarten Vrouenraets1, Jenny Wierenga, Wim Meijberg, Henk Miedema.   

Abstract

OmpF is an essentially nonselective porin isolated from the outer membrane of Escherichia coli. Here we report on the manipulation of the ion selectivity of OmpF by chemical modification with MTS reagents (MTSET, MTSEA, and MTSES) and the (rather bulky) tripeptide glutathione, all cysteine specific. When recorded in a gradient of 0.1//1 M CaCl2 or 0.1//1 M NaCl, pH 7.4 solutions, measured reversal potentials of the most cation-selective modified mutants were (virtually) identical to the Nernst potential of Ca2+ or Na+. Compared to this full cation selectivity, the anion-selective modified mutants performed somewhat less but nevertheless showed high anion selectivity. We conclude that a low permanent charge in combination with a narrow pore can render the same selectivity as a highly charged but wider pore. These results favor the view that both the electrostatic potential arising form the fixed charge in the pore and the space available at the selectivity filter contribute to the charge selection (i.e., cation versus anion selectivity) of a biological ion channel.

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Year:  2005        PMID: 16299071      PMCID: PMC1367271          DOI: 10.1529/biophysj.105.072298

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

1.  Protonation of lysine residues inverts cation/anion selectivity in a model channel.

Authors:  V Borisenko; M S Sansom; G A Woolley
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

3.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

4.  Asymmetric diffusion through synthetic nanopores.

Authors:  Z Siwy; I D Kosińska; A Fuliński; C R Martin
Journal:  Phys Rev Lett       Date:  2005-02-03       Impact factor: 9.161

5.  Ionic selectivity of pores formed by the matrix protein (porin) of Escherichia coli.

Authors:  R Benz; K Janko; P Läuger
Journal:  Biochim Biophys Acta       Date:  1979-03-08

6.  Structure of the sodium channel pore revealed by serial cysteine mutagenesis.

Authors:  M T Pérez-García; N Chiamvimonvat; E Marban; G F Tomaselli
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

7.  Properties of chemically modified porin from Escherichia coli in lipid bilayer membranes.

Authors:  R Benz; H Tokunaga; T Nakae
Journal:  Biochim Biophys Acta       Date:  1984-01-25

8.  Charge selectivity of the designed uncharged peptide ion channel Ac-(LSSLLSL)3-CONH2.

Authors:  P K Kienker; J D Lear
Journal:  Biophys J       Date:  1995-04       Impact factor: 4.033

9.  Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

10.  Chemical modification of matrix porin from Escherichia coli: probing the pore topology of a transmembrane protein.

Authors:  M Schindler; J P Rosenbusch
Journal:  J Cell Biol       Date:  1982-03       Impact factor: 10.539

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  22 in total

1.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

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Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

2.  Ionic partition and transport in multi-ionic channels: a molecular dynamics simulation study of the OmpF bacterial porin.

Authors:  Jordi Faraudo; Carles Calero; Marcel Aguilella-Arzo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

3.  Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF.

Authors:  Henk Miedema; Maarten Vrouenraets; Jenny Wierenga; Bob Eisenberg; Tilman Schirmer; Arnaud Baslé; Wim Meijberg
Journal:  Eur Biophys J       Date:  2006-07-21       Impact factor: 1.733

4.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

5.  Ions and inhibitors in the binding site of HIV protease: comparison of Monte Carlo simulations and the linearized Poisson-Boltzmann theory.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Dirk Gillespie; Bob Eisenberg; Michael K Gilson
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

6.  Engineering channels: atomic biology.

Authors:  Bob Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-28       Impact factor: 11.205

Review 7.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

8.  Comparing the temperature-dependent conductance of the two structurally similar E. coli porins OmpC and OmpF.

Authors:  István Biró; Soroosh Pezeshki; Helge Weingart; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

9.  The ionization state of D37 in E. coli porin OmpF and the nature of conductance fluctuations in D37 mutants.

Authors:  Maarten Vrouenraets; Henk Miedema
Journal:  Eur Biophys J       Date:  2010-06-04       Impact factor: 1.733

10.  Energetics of divalent selectivity in a calcium channel: the ryanodine receptor case study.

Authors:  Dirk Gillespie
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

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