Literature DB >> 14645063

Residue ionization and ion transport through OmpF channels.

Ekaterina M Nestorovich1, Tatiana K Rostovtseva, Sergey M Bezrukov.   

Abstract

Single trimeric channels of the general bacterial porin, OmpF, were reconstituted into planar lipid membranes and their conductance, selectivity, and open-channel noise were studied over a wide range of proton concentrations. From pH 1 to pH 12, channel transport properties displayed three characteristic regimes. First, in acidic solutions, channel conductance is a strong function of pH; it increases by approximately threefold as the proton concentration decreases from pH 1 to pH 5. This rise in conductance is accompanied by a sharp increase in cation transport number and by pronounced open-channel low-frequency current noise with a peak at approximately pH 2.5. Random stepwise transients with amplitudes at approximately 1/5 of the monomer conductance are major contributors to this noise. Second, over the middle range (pH 5/pH 9), channel conductance and selectivity stay virtually constant; open channel noise is at its minimum. Third, over the basic range (pH 9/pH 12), channel conductance and cation selectivity start to grow again with an onset of a higher frequency open-channel noise. We attribute these effects to the reversible protonation of channel residues whose pH-dependent charge influences transport by direct interactions with ions passing through the channel.

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Year:  2003        PMID: 14645063      PMCID: PMC1303675          DOI: 10.1016/S0006-3495(03)74788-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  73 in total

1.  Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae.

Authors:  R Dutzler; G Rummel; S Albertí; S Hernández-Allés; P Phale; J Rosenbusch; V Benedí; T Schirmer
Journal:  Structure       Date:  1999-04-15       Impact factor: 5.006

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

4.  A simple method for the determination of the pore radius of ion channels in planar lipid bilayer membranes.

Authors:  O V Krasilnikov; R Z Sabirov; V I Ternovsky; P G Merzliak; J N Muratkhodjaev
Journal:  FEMS Microbiol Immunol       Date:  1992-09

5.  Orientation and interactions of dipolar molecules during transport through OmpF porin.

Authors:  Kindal M Robertson; D Peter Tieleman
Journal:  FEBS Lett       Date:  2002-09-25       Impact factor: 4.124

6.  Stability of trimeric OmpF porin: the contributions of the latching loop L2.

Authors:  P S Phale; A Philippsen; T Kiefhaber; R Koebnik; V P Phale; T Schirmer; J P Rosenbusch
Journal:  Biochemistry       Date:  1998-11-10       Impact factor: 3.162

7.  Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy.

Authors:  D J Müller; A Engel
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

8.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

9.  Ionic selectivity of pores formed by the matrix protein (porin) of Escherichia coli.

Authors:  R Benz; K Janko; P Läuger
Journal:  Biochim Biophys Acta       Date:  1979-03-08

10.  Probing alamethicin channels with water-soluble polymers. Effect on conductance of channel states.

Authors:  S M Bezrukov; I Vodyanoy
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

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  52 in total

1.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

Review 2.  Applications of biological pores in nanomedicine, sensing, and nanoelectronics.

Authors:  Sheereen Majd; Erik C Yusko; Yazan N Billeh; Michael X Macrae; Jerry Yang; Michael Mayer
Journal:  Curr Opin Biotechnol       Date:  2010-06-18       Impact factor: 9.740

3.  Persister-promoting bacterial toxin TisB produces anion-selective pores in planar lipid bilayers.

Authors:  Philip A Gurnev; Ron Ortenberg; Tobias Dörr; Kim Lewis; Sergey M Bezrukov
Journal:  FEBS Lett       Date:  2012-06-21       Impact factor: 4.124

4.  Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction.

Authors:  Maarten Vrouenraets; Jenny Wierenga; Wim Meijberg; Henk Miedema
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

5.  The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.

Authors:  Sameer Varma; See-Wing Chiu; Eric Jakobsson
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

6.  Channel activity of OmpF monitored in nano-BLMs.

Authors:  Eva K Schmitt; Maarten Vrouenraets; Claudia Steinem
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

7.  Pseudomonas aeruginosa porin OprF: properties of the channel.

Authors:  Ekaterina M Nestorovich; Etsuko Sugawara; Hiroshi Nikaido; Sergey M Bezrukov
Journal:  J Biol Chem       Date:  2006-04-14       Impact factor: 5.157

8.  Conductance and selectivity fluctuations in D127 mutants of the bacterial porin OmpF.

Authors:  Henk Miedema; Maarten Vrouenraets; Jenny Wierenga; Bob Eisenberg; Tilman Schirmer; Arnaud Baslé; Wim Meijberg
Journal:  Eur Biophys J       Date:  2006-07-21       Impact factor: 1.733

9.  Probing the binding affinities of imipenem and ertapenem for outer membrane carboxylate channel D1 (OccD1) from P. aeruginosa: simulation studies.

Authors:  Kamolrat Somboon; Jitti Niramitranon; Prapasiri Pongprayoon
Journal:  J Mol Model       Date:  2017-07-17       Impact factor: 1.810

10.  Inhibition of S. aureus alpha-hemolysin and B. anthracis lethal toxin by beta-cyclodextrin derivatives.

Authors:  Vladimir A Karginov; Ekaterina M Nestorovich; Frank Schmidtmann; Tanisha M Robinson; Adiamseged Yohannes; Nour Eddine Fahmi; Sergey M Bezrukov; Sidney M Hecht
Journal:  Bioorg Med Chem       Date:  2007-05-26       Impact factor: 3.641

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