Literature DB >> 20521145

The ionization state of D37 in E. coli porin OmpF and the nature of conductance fluctuations in D37 mutants.

Maarten Vrouenraets1, Henk Miedema.   

Abstract

Understanding the flow of ions through E. coli porin outer membrane protein F (OmpF) requires knowledge of the charge state of all titratable residues located along the permeation pathway. Earlier theoretical studies proved successful in the calculation of the pK values of most residues. The (apparent) pK of Asp37 (D37), on the other hand, appeared rather sensitive to the (unknown) protein dielectric used. We addressed the protonation state of D37 experimentally by replacing D37 with a (neutral) valine. This D37V mutant expressed reduced cation selectivity, in agreement with the view that D37 in wild-type (WT) OmpF is fully ionized, i.e., deprotonated. The introduction of a (positively charged) arginine at position 37 evoked current fluctuations. Similar behavior was observed in the D37K mutant and the cysteine mutants D37C-MTSEA and D37C-MTSET. Nontitratable [2-(trimethylammonium)ethyl]-methanethiosulfonate (MTSET) carries a permanent and pH-independent charge of 1e, implying that the fluctuations of the D37C-MTSET mutant do not represent (de)protonation reactions of MTSET. We therefore conclude that these fluctuations reflect transitions between conformational substates evoked by structural instabilities due to the positive charge at that particular position in the pore lumen. Based on the similarities between D37C-MTSET fluctuations and those seen in the other mutants, notably D37K, the underlying mechanism of these fluctuations may be (essentially) the same in all four mutants studied.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20521145     DOI: 10.1007/s00249-010-0613-z

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  35 in total

1.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

2.  Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region.

Authors:  Jérôme Bredin; Nathalie Saint; Monique Malléa; Emmanuelle Dé; Gérard Molle; Jean-Marie Pagès; Valérie Simonet
Journal:  Biochem J       Date:  2002-05-01       Impact factor: 3.857

3.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

4.  The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.

Authors:  Sameer Varma; See-Wing Chiu; Eric Jakobsson
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

5.  Stability of trimeric OmpF porin: the contributions of the latching loop L2.

Authors:  P S Phale; A Philippsen; T Kiefhaber; R Koebnik; V P Phale; T Schirmer; J P Rosenbusch
Journal:  Biochemistry       Date:  1998-11-10       Impact factor: 3.162

6.  Structural and functional characterization of OmpF porin mutants selected for larger pore size. II. Functional characterization.

Authors:  N Saint; K L Lou; C Widmer; M Luckey; T Schirmer; J P Rosenbusch
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

7.  Ionic selectivity of pores formed by the matrix protein (porin) of Escherichia coli.

Authors:  R Benz; K Janko; P Läuger
Journal:  Biochim Biophys Acta       Date:  1979-03-08

8.  Modulation of proton-induced current fluctuations in the human nicotinic acetylcholine receptor channel.

Authors:  Christophe Danelon; Jörg Grandl; Ruud Hovius; Horst Vogel
Journal:  Biochim Biophys Acta       Date:  2006-08-02

9.  Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF.

Authors:  Antonio Alcaraz; Ekaterina M Nestorovich; Marcel Aguilella-Arzo; Vicente M Aguilella; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

10.  Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

View more
  1 in total

Review 1.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.