Literature DB >> 23798411

Permeation rates of penicillins indicate that Escherichia coli porins function principally as nonspecific channels.

Seiji Kojima1, Hiroshi Nikaido.   

Abstract

Small, hydrophilic compounds such as β-lactams diffuse across the outer membrane of Gram-negative bacteria through porin channels, which were originally thought to be nonspecific channels devoid of any specificity. However, since the discovery of an ampicillin-binding site within the OmpF channel in 2002, much attention has been focused on the potential specificity of the channel, where the binding site was assumed either to facilitate or to retard the penetration of β-lactams. Since the earlier studies on porin permeability were done without the knowledge of the contribution of multidrug efflux pumps in the overall flux process across the cell envelope, in this study we have carefully studied both the porin permeability and active efflux of ampicillin and benzylpenicillin. We found that the influx occurs apparently by a spontaneous passive diffusion without any indication of specific binding within the concentration range relevant to the antibiotic action of these drugs, and that the higher permeability for ampicillin is totally as expected from the gross property of this drug as a zwitterionic compound. The active efflux by AcrAB was more effective for benzylpenicillin due to the stronger affinity and high degree of positive cooperativity. Our data now give a complete quantitative picture of the influx, efflux, and periplasmic degradation (catalyzed by AmpC β-lactamase) of these two compounds, and correlate closely with the susceptibility of Escherichia coli strains used here, thus validating not only our model but also the parameters obtained in this study.

Entities:  

Keywords:  AcrB; OmpC

Mesh:

Substances:

Year:  2013        PMID: 23798411      PMCID: PMC3710850          DOI: 10.1073/pnas.1310333110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes.

Authors:  M C Sulavik; C Houseweart; C Cramer; N Jiwani; N Murgolo; J Greene; B DiDomenico; K J Shaw; G H Miller; R Hare; G Shimer
Journal:  Antimicrob Agents Chemother       Date:  2001-04       Impact factor: 5.191

2.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

3.  Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region.

Authors:  Jérôme Bredin; Nathalie Saint; Monique Malléa; Emmanuelle Dé; Gérard Molle; Jean-Marie Pagès; Valérie Simonet
Journal:  Biochem J       Date:  2002-05-01       Impact factor: 3.857

4.  Designed to penetrate: time-resolved interaction of single antibiotic molecules with bacterial pores.

Authors:  Ekaterina M Nestorovich; Christophe Danelon; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

5.  Substitutions in the eyelet region disrupt cefepime diffusion through the Escherichia coli OmpF channel.

Authors:  V Simonet; M Malléa; J M Pagès
Journal:  Antimicrob Agents Chemother       Date:  2000-02       Impact factor: 5.191

Review 6.  Multidrug efflux pumps of gram-negative bacteria.

Authors:  H Nikaido
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

7.  Outer membrane of Salmonella typhimurium: chemical analysis and freeze-fracture studies with lipopolysaccharide mutants.

Authors:  J Smit; Y Kamio; H Nikaido
Journal:  J Bacteriol       Date:  1975-11       Impact factor: 3.490

8.  Positive selection for loss of tetracycline resistance.

Authors:  B R Bochner; H C Huang; G L Schieven; B N Ames
Journal:  J Bacteriol       Date:  1980-08       Impact factor: 3.490

9.  Function of the outer membrane of Escherichia coli as a permeability barrier to beta-lactam antibiotics.

Authors:  W Zimmermann; A Rosselet
Journal:  Antimicrob Agents Chemother       Date:  1977-09       Impact factor: 5.191

10.  Beta-lactam resistance modulated by the overexpression of response regulators of two-component signal transduction systems in Escherichia coli.

Authors:  Hidetada Hirakawa; Kunihiko Nishino; Junko Yamada; Takahiro Hirata; Akihito Yamaguchi
Journal:  J Antimicrob Chemother       Date:  2003-09-01       Impact factor: 5.790

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  42 in total

1.  Reversal of the Drug Binding Pocket Defects of the AcrB Multidrug Efflux Pump Protein of Escherichia coli.

Authors:  Ketaki Soparkar; Alfred D Kinana; Jon W Weeks; Keith D Morrison; Hiroshi Nikaido; Rajeev Misra
Journal:  J Bacteriol       Date:  2015-08-03       Impact factor: 3.490

2.  Probing the binding affinities of imipenem and ertapenem for outer membrane carboxylate channel D1 (OccD1) from P. aeruginosa: simulation studies.

Authors:  Kamolrat Somboon; Jitti Niramitranon; Prapasiri Pongprayoon
Journal:  J Mol Model       Date:  2017-07-17       Impact factor: 1.810

3.  Quantitative measurement of the outer membrane permeability in Escherichia coli lpp and tol-pal mutants defines the significance of Tol-Pal function for maintaining drug resistance.

Authors:  Hikaru Kowata; Saeko Tochigi; Tomonobu Kusano; Seiji Kojima
Journal:  J Antibiot (Tokyo)       Date:  2016-05-11       Impact factor: 2.649

Review 4.  Molecular mechanisms of antibiotic resistance.

Authors:  Jessica M A Blair; Mark A Webber; Alison J Baylay; David O Ogbolu; Laura J V Piddock
Journal:  Nat Rev Microbiol       Date:  2014-12-01       Impact factor: 60.633

Review 5.  The challenge of efflux-mediated antibiotic resistance in Gram-negative bacteria.

Authors:  Xian-Zhi Li; Patrick Plésiat; Hiroshi Nikaido
Journal:  Clin Microbiol Rev       Date:  2015-04       Impact factor: 26.132

6.  Modeling the Kinetics of the Permeation of Antibacterial Agents into Growing Bacteria and Its Interplay with Efflux.

Authors:  Wright W Nichols
Journal:  Antimicrob Agents Chemother       Date:  2017-09-22       Impact factor: 5.191

7.  Breaking the Permeability Barrier of Escherichia coli by Controlled Hyperporination of the Outer Membrane.

Authors:  Ganesh Krishnamoorthy; David Wolloscheck; Jon W Weeks; Cameron Croft; Valentin V Rybenkov; Helen I Zgurskaya
Journal:  Antimicrob Agents Chemother       Date:  2016-11-21       Impact factor: 5.191

8.  Layer-by-layer Assembled Membranes with Immobilized Porins.

Authors:  Sebastián Hernández; Cassandra Porter; Xinyi Zhang; Yinan Wei; Dibakar Bhattacharyya
Journal:  RSC Adv       Date:  2017-12-13       Impact factor: 3.361

9.  Ampicillin permeation across OmpF, the major outer-membrane channel in Escherichia coli.

Authors:  Ishan Ghai; Harsha Bajaj; Jayesh Arun Bafna; Hussein Ali El Damrany Hussein; Mathias Winterhalter; Richard Wagner
Journal:  J Biol Chem       Date:  2018-03-14       Impact factor: 5.157

10.  Role of TEM-1 β-Lactamase in the Predominance of Ampicillin-Sulbactam-Nonsusceptible Escherichia coli in Japan.

Authors:  Taro Noguchi; Yasufumi Matsumura; Toru Kanahashi; Michio Tanaka; Yasuhiro Tsuchido; Takuro Matsumura; Satoshi Nakano; Masaki Yamamoto; Miki Nagao; Satoshi Ichiyama
Journal:  Antimicrob Agents Chemother       Date:  2019-01-29       Impact factor: 5.191

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