Literature DB >> 11387230

Specific interaction between the ribosome recycling factor and the elongation factor G from Mycobacterium tuberculosis mediates peptidyl-tRNA release and ribosome recycling in Escherichia coli.

A R Rao1, U Varshney.   

Abstract

Once the translating ribosomes reach a termination codon, the nascent polypeptide chain is released in a factor-dependent manner. However, the P-site-bound deacylated tRNA and the ribosomes themselves remain bound to the mRNA (post-termination complex). The ribosome recycling factor (RRF) plays a vital role in dissociating this complex. Here we show that the Mycobacterium tuberculosis RRF (MtuRRF) fails to rescue Escherichia coli LJ14, a strain temperature-sensitive for RRF (frr(ts)). More interestingly, co-expression of M.tuberculosis elongation factor G (MtuEFG) with MtuRRF rescues the frr(ts) strain of E.coli. The simultaneous expression of MtuEFG is also needed to cause an enhanced release of peptidyl-tRNAs in E.coli by MtuRRF. These observations provide the first genetic evidence for a functional interaction between RRF and EFG. Both the in vivo and in vitro analyses suggest that RRF does not distinguish between the translating and terminating ribosomes for their dissociation from mRNA. In addition, complementation of E.coli PEM100 (fusA(ts)) with MtuEFG suggests that the mechanism of RRF function is independent of the translocation activity of EFG.

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Year:  2001        PMID: 11387230      PMCID: PMC125489          DOI: 10.1093/emboj/20.11.2977

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  36 in total

1.  Mutants of Escherichia coli initiator tRNA defective in initiation. Effects of overproduction of methionyl-tRNA transformylase and the initiation factors IF2 and IF3.

Authors:  D Mangroo; U L RajBhandary
Journal:  J Biol Chem       Date:  1995-05-19       Impact factor: 5.157

2.  Form follows function: structure of an elongation factor G-ribosome complex.

Authors:  M V Rodnina; W Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

3.  Release factor RF-3 GTPase activity acts in disassembly of the ribosome termination complex.

Authors:  G Grentzmann; P J Kelly; S Laalami; M Shuda; M A Firpo; Y Cenatiempo; A Kaji
Journal:  RNA       Date:  1998-08       Impact factor: 4.942

4.  Evidence for in vivo ribosome recycling, the fourth step in protein biosynthesis.

Authors:  L Janosi; S Mottagui-Tabar; L A Isaksson; Y Sekine; E Ohtsubo; S Zhang; S Goon; S Nelken; M Shuda; A Kaji
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

5.  Ribosome release factor RF4 and termination factor RF3 are involved in dissociation of peptidyl-tRNA from the ribosome.

Authors:  V Heurgué-Hamard; R Karimi; L Mora; J MacDougall; C Leboeuf; G Grentzmann; M Ehrenberg; R H Buckingham
Journal:  EMBO J       Date:  1998-02-02       Impact factor: 11.598

6.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  Amber mutations in ribosome recycling factors of Escherichia coli and Thermus thermophilus: evidence for C-terminal modulator element.

Authors:  T Fujiwara; K Ito; T Nakayashiki; Y Nakamura
Journal:  FEBS Lett       Date:  1999-03-26       Impact factor: 4.124

Review 8.  Ribosome recycling by ribosome recycling factor (RRF)--an important but overlooked step of protein biosynthesis.

Authors:  L Janosi; H Hara; S Zhang; A Kaji
Journal:  Adv Biophys       Date:  1996

9.  Molecular cloning, sequencing, purification, and characterization of Pseudomonas aeruginosa ribosome recycling factor.

Authors:  M Ohnishi; L Janosi; M Shuda; H Matsumoto; T Hayashi; Y Terawaki; A Kaji
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

10.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

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  29 in total

Review 1.  Horizontal gene transfer: a critical view.

Authors:  C G Kurland; B Canback; Otto G Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

2.  Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.

Authors:  Rajendra K Agrawal; Manjuli R Sharma; Michael C Kiel; Go Hirokawa; Timothy M Booth; Christian M T Spahn; Robert A Grassucci; Akira Kaji; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

3.  HflX is a ribosome-splitting factor rescuing stalled ribosomes under stress conditions.

Authors:  Yanqing Zhang; Chandra Sekhar Mandava; Wei Cao; Xiaojing Li; Dejiu Zhang; Ningning Li; Yixiao Zhang; Xiaoxiao Zhang; Yan Qin; Kaixia Mi; Jianlin Lei; Suparna Sanyal; Ning Gao
Journal:  Nat Struct Mol Biol       Date:  2015-10-12       Impact factor: 15.369

4.  Species-Specific Interactions of Arr with RplK Mediate Stringent Response in Bacteria.

Authors:  Priyanka Agrawal; Rajagopal Varada; Shivjee Sah; Souvik Bhattacharyya; Umesh Varshney
Journal:  J Bacteriol       Date:  2018-02-23       Impact factor: 3.490

Review 5.  Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

Authors:  Anuradha Seshadri; Umesh Varshney
Journal:  J Biosci       Date:  2006-06       Impact factor: 1.826

Review 6.  What recent ribosome structures have revealed about the mechanism of translation.

Authors:  T Martin Schmeing; V Ramakrishnan
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

7.  Identical RNA-protein interactions in vivo and in vitro and a scheme of folding the newly synthesized proteins by ribosomes.

Authors:  Debasis Das; Dibyendu Samanta; Salman Hasan; Anindita Das; Arpita Bhattacharya; Santanu Dasgupta; Abhijit Chakrabarti; Pradip Ghorai; Chanchal Das Gupta
Journal:  J Biol Chem       Date:  2012-08-29       Impact factor: 5.157

8.  Purification, crystallization and preliminary crystallographic analysis of a ribosome-recycling factor from Thermoanaerobacter tengcongensis (TteRRF).

Authors:  Guijun Shang; Duo Feng; Fang Lu; Hongjie Zhang; Huaixing Cang; Wei Gao; Ruchang Bi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-15       Impact factor: 1.056

Review 9.  tRNA engineering for manipulating genetic code.

Authors:  Takayuki Katoh; Yoshihiko Iwane; Hiroaki Suga
Journal:  RNA Biol       Date:  2017-09-06       Impact factor: 4.652

10.  Molecular flexibility of Mycobacterium tuberculosis ribosome recycling factor and its functional consequences: an exploration involving mutants.

Authors:  M Selvaraj; A Govindan; A Seshadri; B Dubey; U Varshney; M Vijayan
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

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