Literature DB >> 10214965

Amber mutations in ribosome recycling factors of Escherichia coli and Thermus thermophilus: evidence for C-terminal modulator element.

T Fujiwara1, K Ito, T Nakayashiki, Y Nakamura.   

Abstract

Ribosome recycling factor, referred to as RRF, is essential for bacterial growth because of its activity of decomposition of the post-termination complex of the ribosome after release of polypeptides. In this study, we isolated a conditionally lethal amber mutation, named frr-3, in the Escherichia coli RRF gene at amino acid position 161, showing that the truncation of the C-terminal 25 amino acids of RRF is lethal to E. coli. An RRF gene cloned from Thermus thermophilus, whose protein is 44% identical and 68% similar to E. coli RRF, failed to complement the frr-3(Am) allele. However, truncation of the C-terminal five amino acids conferred intergeneric complementation activity on T. thermophilus RRF, demonstrating the modulator activity of the C-terminal tail. Rapid purification of T. thermophilus RRF was achieved by T7-RNA polymerase-driven overexpression for crystallography.

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Year:  1999        PMID: 10214965     DOI: 10.1016/s0014-5793(99)00302-6

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

1.  Functional mapping of ribosome-contact sites in the ribosome recycling factor: a structural view from a tRNA mimic.

Authors:  T Fujiwara; K Ito; Y Nakamura
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

2.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

3.  Interaction of RRF and EF-G from E. coli and T. thermophilus with ribosomes from both origins--insight into the mechanism of the ribosome recycling step.

Authors:  V Samuel Raj; Hideko Kaji; Akira Kaji
Journal:  RNA       Date:  2005-01-20       Impact factor: 4.942

4.  Exploring the flexibility of ribosome recycling factor using molecular dynamics.

Authors:  Scott M Stagg; Stephen C Harvey
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

5.  Specific interaction between the ribosome recycling factor and the elongation factor G from Mycobacterium tuberculosis mediates peptidyl-tRNA release and ribosome recycling in Escherichia coli.

Authors:  A R Rao; U Varshney
Journal:  EMBO J       Date:  2001-06-01       Impact factor: 11.598

6.  Domain II plays a crucial role in the function of ribosome recycling factor.

Authors:  Peng Guo; Liqiang Zhang; Hongjie Zhang; Yanming Feng; Guozhong Jing
Journal:  Biochem J       Date:  2006-02-01       Impact factor: 3.857

7.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

8.  Molecular flexibility of Mycobacterium tuberculosis ribosome recycling factor and its functional consequences: an exploration involving mutants.

Authors:  M Selvaraj; A Govindan; A Seshadri; B Dubey; U Varshney; M Vijayan
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

9.  Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy.

Authors:  Ziao Fu; Sandip Kaledhonkar; Anneli Borg; Ming Sun; Bo Chen; Robert A Grassucci; Måns Ehrenberg; Joachim Frank
Journal:  Structure       Date:  2016-11-03       Impact factor: 5.006

10.  Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance.

Authors:  Ravi Kiran Koripella; Ayush Deep; Ekansh K Agrawal; Pooja Keshavan; Nilesh K Banavali; Rajendra K Agrawal
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

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