Literature DB >> 24817715

Purification, crystallization and preliminary crystallographic analysis of a ribosome-recycling factor from Thermoanaerobacter tengcongensis (TteRRF).

Guijun Shang1, Duo Feng1, Fang Lu1, Hongjie Zhang2, Huaixing Cang1, Wei Gao1, Ruchang Bi2.   

Abstract

Ribosome-recycling factor (RRF) plays an essential role in the fourth step of protein synthesis in prokaryotes. RRF combined with elongation factor G (EF-G) disassembles the post-termination ribosome complex and recycles the protein synthesis machine for the next round of translation. A reductive-methylation-modified RRF from Thermoanaerobacter tengcongensis (TteRRF) has been crystallized using the vapour-diffusion method. The crystal grew in a condition consisting of 0.1 M citric acid pH 3.5, 3.0 M NaCl and 50 mg ml(-1) methylated protein solution at 289 K. A complete data set was collected from a crystal to 2.80 Å resolution using synchrotron radiation at 100 K. The crystal belonged to space group P6122/P6522 with unit-cell parameters a = b = 103.26, c = 89.17 Å. The asymmetric unit was estimated to contain one molecule of TteRRF.

Entities:  

Keywords:  Thermoanaerobacter tengcongensis; ribosome-recycling factor

Mesh:

Substances:

Year:  2014        PMID: 24817715      PMCID: PMC4014324          DOI: 10.1107/S2053230X1400507X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  21 in total

1.  Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic.

Authors:  M Selmer; S Al-Karadaghi; G Hirokawa; A Kaji; A Liljas
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

2.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

3.  Characteristic domain motion in the ribosome recycling factor revealed by 15N NMR relaxation experiments and molecular dynamics simulations.

Authors:  Takuya Yoshida; Shinichiro Oka; Susumu Uchiyama; Hiroaki Nakano; Tadayuki Kawasaki; Tadayasu Ohkubo; Yuji Kobayashi
Journal:  Biochemistry       Date:  2003-04-15       Impact factor: 3.162

4.  Solution structure of the ribosome recycling factor from Aquifex aeolicus.

Authors:  T Yoshida; S Uchiyama; H Nakano; H Kashimori; H Kijima; T Ohshima; Y Saihara; T Ishino; H Shimahara; T Yoshida; K Yokose; T Ohkubo; A Kaji; Y Kobayashi
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 6.  Dual functions of ribosome recycling factor in protein biosynthesis: disassembling the termination complex and preventing translational errors.

Authors:  L Janosi; R Ricker; A Kaji
Journal:  Biochimie       Date:  1996       Impact factor: 4.079

7.  X-ray structural studies of Mycobacterium tuberculosis RRF and a comparative study of RRFs of known structure. Molecular plasticity and biological implications.

Authors:  K Saikrishnan; S K Kalapala; U Varshney; M Vijayan
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

8.  Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth.

Authors:  L Janosi; I Shimizu; A Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

9.  The ribosome-recycling step: consensus or controversy?

Authors:  Go Hirokawa; Natalia Demeshkina; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji
Journal:  Trends Biochem Sci       Date:  2006-02-17       Impact factor: 13.807

10.  (NZ)CH...O contacts assist crystallization of a ParB-like nuclease.

Authors:  Neil Shaw; Chongyun Cheng; Wolfram Tempel; Jessie Chang; Joseph Ng; Xin-Yu Wang; Sarah Perrett; John Rose; Zihe Rao; Bi-Cheng Wang; Zhi-Jie Liu
Journal:  BMC Struct Biol       Date:  2007-07-07
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