Literature DB >> 16809861

Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

Anuradha Seshadri1, Umesh Varshney.   

Abstract

Ribosome recycling is a process which dissociates the post-termination complexes (post-TC) consisting of mRNA-bound ribosomes harbouring deacylated tRNA(s). Ribosome recycling factor (RRF), and elongation factor G (EFG) participate in this crucial process to free the ribosomal subunits for a new round of translation. We discuss the over-all pathway of ribosome recycling in eubacteria with especial reference to the important role of the initiation factor 3 (IF3) in this process. Depending on the step(s) at which IF3 function is implicated, three models have been proposed. In model 1, RRF and EFG dissociate the post-TCs into the 50S and 30S subunits, mRNA and tRNA(s). In this model, IF3, which binds to the 30S subunit, merely keeps the dissociated subunits apart by its anti-association activity. In model 2, RRF and EFG separate the 50S subunit from the post-TC. IF3 then dissociates the remaining complex of mRNA, tRNA and the 30S subunit, and keeps the ribosomal subunits apart from each other. However, in model 3, both the genetic and biochemical evidence support a more active role for IF3 even at the step of dissociation of the post-TC by RRF and EFG into the 50S and 30S subunits.

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Year:  2006        PMID: 16809861     DOI: 10.1007/bf02703921

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  54 in total

1.  Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.

Authors:  T Toyoda; O F Tin; K Ito; T Fujiwara; T Kumasaka; M Yamamoto; M B Garber; Y Nakamura
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

2.  A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3.

Authors:  A V Zavialov; R H Buckingham; M Ehrenberg
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

3.  Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

Authors:  Andrei V Zavialov; Liliana Mora; Richard H Buckingham; Måns Ehrenberg
Journal:  Mol Cell       Date:  2002-10       Impact factor: 17.970

4.  Release factor RF3 abolishes competition between release factor RF1 and ribosome recycling factor (RRF) for a ribosome binding site.

Authors:  M Y Pavlov; D V Freistroffer; V Heurgué-Hamard; R H Buckingham; M Ehrenberg
Journal:  J Mol Biol       Date:  1997-10-24       Impact factor: 5.469

5.  In vivo effect of inactivation of ribosome recycling factor - fate of ribosomes after unscheduled translation downstream of open reading frame.

Authors:  Go Hirokawa; Hachiro Inokuchi; Hideko Kaji; Kazuei Igarashi; Akira Kaji
Journal:  Mol Microbiol       Date:  2004-11       Impact factor: 3.501

6.  Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

Authors:  Andrey V Zavialov; Vasili V Hauryliuk; Måns Ehrenberg
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

Review 7.  Polypeptide chain release factors.

Authors:  R H Buckingham; G Grentzmann; L Kisselev
Journal:  Mol Microbiol       Date:  1997-05       Impact factor: 3.501

8.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

9.  Elongation factor G participates in ribosome disassembly by interacting with ribosome recycling factor at their tRNA-mimicry domains.

Authors:  Koichi Ito; Toshinobu Fujiwara; Tomohiko Toyoda; Yoshikazu Nakamura
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

10.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

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  6 in total

1.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

2.  Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA Dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli.

Authors:  Ming Gong; Luis R Cruz-Vera; Charles Yanofsky
Journal:  J Bacteriol       Date:  2007-02-09       Impact factor: 3.490

3.  A highly purified, fluorescently labeled in vitro translation system for single-molecule studies of protein synthesis.

Authors:  Jingyi Fei; Jiangning Wang; Samuel H Sternberg; Daniel D MacDougall; Margaret M Elvekrog; Dileep K Pulukkunat; Michael T Englander; Ruben L Gonzalez
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Molecular flexibility of Mycobacterium tuberculosis ribosome recycling factor and its functional consequences: an exploration involving mutants.

Authors:  M Selvaraj; A Govindan; A Seshadri; B Dubey; U Varshney; M Vijayan
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

5.  The role of GTP in transient splitting of 70S ribosomes by RRF (ribosome recycling factor) and EF-G (elongation factor G).

Authors:  Go Hirokawa; Nobuhiro Iwakura; Akira Kaji; Hideko Kaji
Journal:  Nucleic Acids Res       Date:  2008-10-23       Impact factor: 16.971

6.  Ribosome recycling defects modify the balance between the synthesis and assembly of specific subunits of the oxidative phosphorylation complexes in yeast mitochondria.

Authors:  Jelena Ostojić; Cristina Panozzo; Alexa Bourand-Plantefol; Christopher J Herbert; Geneviève Dujardin; Nathalie Bonnefoy
Journal:  Nucleic Acids Res       Date:  2016-06-01       Impact factor: 16.971

  6 in total

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