Literature DB >> 8107853

Measurement of the beta-sheet-forming propensities of amino acids.

D L Minor1, P S Kim.   

Abstract

Several model systems have been used to evaluate the alpha-helical propensities of different amino acids. In contrast, experimental quantitation of beta-sheet preferences has been addressed in only one model system, a zinc-finger peptide. Here we measure the relative propensity for beta-sheet formation of the twenty naturally occurring amino acids in a variant of the small, monomeric, beta-sheet-rich, IgG-binding domain from protein G. Amino-acid substitutions were made at a guest site on the solvent-exposed surface of the beta-sheet. Several criteria were used to establish that the mutations did not cause significant structural changes: binding to the Fc domain of IgG, calorimetric unfolding and NMR spectroscopy. Characterization of the terminal stabilities of these proteins leads to a thermodynamic scale for beta-sheet propensities that spans a range of approximately 2 kcal mol-1 for the naturally occurring amino acids, excluding proline. The magnitude of the differences suggests that beta-sheet preferences can be important determinants of protein stability.

Entities:  

Mesh:

Substances:

Year:  1994        PMID: 8107853     DOI: 10.1038/367660a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  162 in total

1.  The turn sequence directs beta-strand alignment in designed beta-hairpins.

Authors:  E de Alba; M Rico; M A Jiménez
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  The identification of conserved interactions within the SH3 domain by alignment of sequences and structures.

Authors:  S M Larson; A R Davidson
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

3.  Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone.

Authors:  A G Street; S L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

4.  A beta-stranded motif drives capsid protein oligomers of the parvovirus minute virus of mice into the nucleus for viral assembly.

Authors:  E Lombardo; J C Ramírez; M Agbandje-McKenna; J M Almendral
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

5.  Structure-based conformational preferences of amino acids.

Authors:  P Koehl; M Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

6.  Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues.

Authors:  M A Ceruso; A Amadei; A Di Nola
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

7.  WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state.

Authors:  E K Koepf; H M Petrassi; M Sudol; J W Kelly
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

8.  Turn scanning by site-directed mutagenesis: application to the protein folding problem using the intestinal fatty acid binding protein.

Authors:  K Kim; C Frieden
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

9.  Role of a solvent-exposed aromatic cluster in the folding of Escherichia coli CspA.

Authors:  H M Rodriguez; D M Vu; L M Gregoret
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

10.  Protein engineering as a strategy to avoid formation of amyloid fibrils.

Authors:  V Villegas; J Zurdo; V V Filimonov; F X Avilés; C M Dobson; L Serrano
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.