Literature DB >> 12717034

Stability of monomeric Cro variants: Isoenergetic transformation of a type I' to a type II' beta-hairpin by single amino acid replacements.

A K M M Mollah1, Rhonda L Stennis, Michael C Mossing.   

Abstract

The thermodynamic stabilities of three monomeric variants of the bacteriophage lambda Cro repressor that differ only in the sequence of two amino acids at the apex of an engineered beta-hairpin have been determined. The sequences of the turns are EVK-XX-EVK, where the two central residues are DG, GG, and GT, respectively. Standard-state unfolding free energies, determined from circular dichroism measurements as a function of urea concentration, range from 2.4 to 2.7 kcal/mole, while those determined from guanidine hydrochloride range from 2.8 to 3.3 kcal/mole for the three proteins. Thermal denaturation yields van't Hoff unfolding enthalpies of 36 to 40 kcal /mole at midpoint temperatures in the range of 53 to 58 degrees C. Extrapolation of the thermal denaturation free energies with heat capacities of 400 to 600 cal/mole deg gives good agreement with the parameters determined in denaturant titrations. As predicted from statistical surveys of amino acid replacements in beta-hairpins, energetic barriers to transformation from a type I' turn (DG) to a type II' turn (GT) can be quite small.

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Year:  2003        PMID: 12717034      PMCID: PMC2323882          DOI: 10.1110/ps.0239003

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  22 in total

1.  Folding and assembly of lambda Cro repressor dimers are kinetically limited by proline isomerization.

Authors:  W John Satumba; Michael C Mossing
Journal:  Biochemistry       Date:  2002-12-03       Impact factor: 3.162

2.  Toward predicting protein topology: an approach to identifying beta hairpins.

Authors:  Xavier de la Cruz; E Gail Hutchinson; Adrian Shepherd; Janet M Thornton
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

3.  Conformation of beta hairpins in protein structures: classification and diversity in homologous structures.

Authors:  B L Sibanda; J M Thornton
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

4.  Stable, monomeric variants of lambda Cro obtained by insertion of a designed beta-hairpin sequence.

Authors:  M C Mossing; R T Sauer
Journal:  Science       Date:  1990-12-21       Impact factor: 47.728

5.  Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering.

Authors:  B L Sibanda; T L Blundell; J M Thornton
Journal:  J Mol Biol       Date:  1989-04-20       Impact factor: 5.469

Review 6.  The thermodynamic stability of proteins.

Authors:  J A Schellman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

7.  Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants.

Authors:  M M Santoro; D W Bolen
Journal:  Biochemistry       Date:  1988-10-18       Impact factor: 3.162

8.  Viscosity and density of aqueous solutions of urea and guanidine hydrochloride.

Authors:  K Kawahara; C Tanford
Journal:  J Biol Chem       Date:  1966-07-10       Impact factor: 5.157

9.  Tryptophan zippers: stable, monomeric beta -hairpins.

Authors:  A G Cochran; N J Skelton; M A Starovasnik
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

10.  Conformational interconversions in peptide beta-turns: analysis of turns in proteins and computational estimates of barriers.

Authors:  K Gunasekaran; L Gomathi; C Ramakrishnan; J Chandrasekhar; P Balaram
Journal:  J Mol Biol       Date:  1998-12-18       Impact factor: 5.469

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