Literature DB >> 9657719

Design of a 20-amino acid, three-stranded beta-sheet protein.

T Kortemme1, M Ramírez-Alvarado, L Serrano.   

Abstract

A 20-residue protein (named Betanova) forming a monomeric, three-stranded, antiparallel beta sheet was designed using a structural backbone template and an iterative hierarchical approach. Structural and physicochemical characterization show that the beta-sheet conformation is stabilized by specific tertiary interactions and that the protein exhibits a cooperative two-state folding-unfolding transition, which is a hallmark of natural proteins. The Betanova molecule constitutes a tractable model system to aid in the understanding of beta-sheet formation, including beta-sheet aggregation and amyloid fibril formation.

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Year:  1998        PMID: 9657719     DOI: 10.1126/science.281.5374.253

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  64 in total

1.  Stability of the beta-sheet of the WW domain: A molecular dynamics simulation study.

Authors:  G T Ibragimova; R C Wade
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  De novo design and characterization of an apolar helical hairpin peptide at atomic resolution: Compaction mediated by weak interactions.

Authors:  U A Ramagopal; S Ramakumar; D Sahal; V S Chauhan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

3.  Synthesis and NMR solution structure of an alpha-helical hairpin stapled with two disulfide bridges.

Authors:  P Barthe; S Rochette; C Vita; C Roumestand
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

4.  Rotamer strain as a determinant of protein structural specificity.

Authors:  G A Lazar; E C Johnson; J R Desjarlais; T M Handel
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Design of a minimal protein oligomerization domain by a structural approach.

Authors:  P Burkhard; M Meier; A Lustig
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

6.  Recent improvements in prediction of protein structure by global optimization of a potential energy function.

Authors:  J Pillardy; C Czaplewski; A Liwo; J Lee; D R Ripoll; R Kaźmierkiewicz; S Oldziej; W J Wedemeyer; K D Gibson; Y A Arnautova; J Saunders; Y J Ye; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

7.  WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state.

Authors:  E K Koepf; H M Petrassi; M Sudol; J W Kelly
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

Review 8.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

9.  Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins.

Authors:  Weixun Wang; Michael H Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

10.  A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field.

Authors:  Adam Liwo; Piotr Arłukowicz; Cezary Czaplewski; Stanislaw Ołdziej; Jaroslaw Pillardy; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

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