Literature DB >> 11200529

Lanthanide induced residual dipolar couplings for the conformational investigation of peripheral 15NH2 moieties.

I Bertini1, I C Felli, C Luchinat.   

Abstract

The Ca2 calbindin protein in which one calcium has been substituted with Ce(III), Yb(III) and Dy(III) displays substantial alignment in high magnetic fields due to the high anisotropy of the metal magnetic susceptibility. This property has allowed the measurement of residual dipolar coupling contributions to 1J(HN) and 2J(HH) couplings of asparagine and glutamine NH2 moieties. Such data have been used to aid structural characterization of these groups. The exploitation of auto-orientation of magnetic anisotropic metalloproteins represents a step ahead in the investigation of the conformational space of peripheral residues that are not fixed by the protein folding.

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Year:  2000        PMID: 11200529     DOI: 10.1023/a:1026785228634

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

1.  Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.

Authors:  M W Fischer; J A Losonczi; J L Weaver; J H Prestegard
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

2.  Measurement of homonuclear (2)J-couplings from spin-state selective double-/zero-quantum two-dimensional NMR spectra.

Authors:  P Permi; S Heikkinen; I Kilpeläinen; A Annila
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

3.  A new method for the simultaneous measurement of magnitude and sign of 1DCH and 1DHH dipolar couplings in methylene groups.

Authors:  T Carlomagno; W Peti; C Griesinger
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

4.  PSEUDYANA for NMR structure calculation of paramagnetic metalloproteins using torsion angle molecular dynamics.

Authors:  L Banci; I Bertini; M A Cremonini; G Gori-Savellini; C Luchinat; K Wüthrich; P Güntert
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

5.  NMR experiments for the sign determination of homonuclear scalar and residual dipolar couplings.

Authors:  G Otting; M Rückert; M H Levitt; A Moshref
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

6.  NMR evidence for slow collective motions in cyanometmyoglobin.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Nat Struct Biol       Date:  1997-04

7.  Biophysical studies of engineered mutant proteins based on calbindin D9k modified in the pseudo EF-hand.

Authors:  C Johansson; P Brodin; T Grundström; E Thulin; S Forsén; T Drakenberg
Journal:  Eur J Biochem       Date:  1990-01-26

8.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

9.  NMR approaches for monitoring domain orientations in calcium-binding proteins in solution using partial replacement of Ca2+ by Tb3+.

Authors:  R R Biekofsky; F W Muskett; J M Schmidt; S R Martin; J P Browne; P M Bayley; J Feeney
Journal:  FEBS Lett       Date:  1999-11-05       Impact factor: 4.124

10.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

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  8 in total

1.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

Review 2.  The dynamic duo: combining NMR and small angle scattering in structural biology.

Authors:  Janosch Hennig; Michael Sattler
Journal:  Protein Sci       Date:  2014-04-17       Impact factor: 6.725

3.  Calmodulin tagging provides a general method of using lanthanide induced magnetic field orientation to observe residual dipolar couplings in proteins in solution.

Authors:  J Feeny; B Birdsall; A F Bradbury; R R Biekofsky; P M Bayley
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

4.  Structure-independent cross-validation between residual dipolar couplings originating from internal and external orienting media.

Authors:  Renato Barbieri; Ivano Bertini; Yong-Min Lee; Claudio Luchinat; Aldrik H Velders
Journal:  J Biomol NMR       Date:  2002-04       Impact factor: 2.835

5.  Using lanthanide ions to align troponin complexes in solution: order of lanthanide occupancy in cardiac troponin C.

Authors:  Grant L Gay; Darrin A Lindhout; Brian D Sykes
Journal:  Protein Sci       Date:  2004-03       Impact factor: 6.725

Review 6.  Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.

Authors:  Vincenzo Venditti; Timothy K Egner; G Marius Clore
Journal:  Chem Rev       Date:  2016-01-07       Impact factor: 60.622

7.  Selective (15)N-labeling of the side-chain amide groups of asparagine and glutamine for applications in paramagnetic NMR spectroscopy.

Authors:  Chan Cao; Jia-Liang Chen; Yin Yang; Feng Huang; Gottfried Otting; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2014-07-08       Impact factor: 2.835

8.  Synthesis of lanthanide tag and experimental studies on paramagnetically induced residual dipolar couplings.

Authors:  Ali Yassin; Bilal Nehmeh; Sally El Kantar; Yara Al Kazzaz; Elias Akoury
Journal:  BMC Chem       Date:  2022-07-21
  8 in total

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