Literature DB >> 24687405

The dynamic duo: combining NMR and small angle scattering in structural biology.

Janosch Hennig1, Michael Sattler.   

Abstract

Structural biology provides essential information for elucidating molecular mechanisms that underlie biological function. Advances in hardware, sample preparation, experimental methods, and computational approaches now enable structural analysis of protein complexes with increasing complexity that more closely represent biologically entities in the cellular environment. Integrated multidisciplinary approaches are required to overcome limitations of individual methods and take advantage of complementary aspects provided by different structural biology techniques. Although X-ray crystallography remains the method of choice for structural analysis of large complexes, crystallization of flexible systems is often difficult and does typically not provide insights into conformational dynamics present in solution. Nuclear magnetic resonance spectroscopy (NMR) is well-suited to study dynamics at picosecond to second time scales, and to map binding interfaces even of large systems at residue resolution but suffers from poor sensitivity with increasing molecular weight. Small angle scattering (SAS) methods provide low resolution information in solution and can characterize dynamics and conformational equilibria complementary to crystallography and NMR. The combination of NMR, crystallography, and SAS is, thus, very useful for analysis of the structure and conformational dynamics of (large) protein complexes in solution. In high molecular weight systems, where NMR data are often sparse, SAS provides additional structural information and can differentiate between NMR-derived models. Scattering data can also validate the solution conformation of a crystal structure and indicate the presence of conformational equilibria. Here, we review current state-of-the-art approaches for combining NMR, crystallography, and SAS data to characterize protein complexes in solution.
© 2014 The Protein Society.

Keywords:  multidomain proteins; nuclear magnetic resonance spectroscopy; protein complexes; small angle X-ray scattering; small angle neutron scattering; structural biology

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Year:  2014        PMID: 24687405      PMCID: PMC4093944          DOI: 10.1002/pro.2467

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  144 in total

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Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

Review 6.  Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

Authors:  Jill Trewhella; Wayne A Hendrickson; Gerard J Kleywegt; Andrej Sali; Mamoru Sato; Torsten Schwede; Dmitri I Svergun; John A Tainer; John Westbrook; Helen M Berman
Journal:  Structure       Date:  2013-06-04       Impact factor: 5.006

7.  Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex.

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  13 in total

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4.  Deciphering the "Fuzzy" Interaction of FG Nucleoporins and Transport Factors Using Small-Angle Neutron Scattering.

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6.  Visualizing the Path of DNA through Proteins Using DREEM Imaging.

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7.  NMR characterization of HtpG, the E. coli Hsp90, using sparse labeling with 13C-methyl alanine.

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8.  Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints.

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