Literature DB >> 11693567

Calmodulin tagging provides a general method of using lanthanide induced magnetic field orientation to observe residual dipolar couplings in proteins in solution.

J Feeny1, B Birdsall, A F Bradbury, R R Biekofsky, P M Bayley.   

Abstract

A general method is presented for magnetic field alignment of proteins in solution. By tagging a target protein with calmodulin saturated with paramagnetic lanthanide ions it is possible to measure substantial residual dipolar couplings (RDC) whilst minimising the effects of pseudocontact shifts on the target protein. A construct was made consisting of a calmodulin-binding peptide (M13 from sk-MLCK) attached to a target protein, dihydrofolate reductase in this case. The engineered protein binds tightly to calmodulin saturated with terbium, a paramagnetic lanthanide ion. By using only a short linker region between the M13 and the target protein, some of the magnetic field alignment induced in the CaM(Tb3+)4 is effectively transmitted to the target protein (DHFR). 1H-15N HSQC IPAP experiments on the tagged complex containing 15N-labelled DHFR-M13 protein and unlabelled CaM(Tb3+)4 allow one to measure RDC contributions in the aligned complex. RDC values in the range +4.0 to -7.4 Hz were measured at 600 MHz. Comparisons of 1H-15N HSQC spectra of 15N-DHFR-M13 alone and its complexes with CaM(Ca2+)4 and CaM(Tb3+)4 indicated that (i) the structure of the target protein is not affected by the complex formation and (ii) the spectra of the target protein are not seriously perturbed by pseudocontact shifts. The use of a relatively large tagging group (CaM) allows us to use a lanthanide ion with a very high magnetic susceptibility anisotropy (such as Tb3+) to give large alignments while maintaining relatively long distances from the target protein nuclei (and hence giving only small pseudocontact shift contributions).

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Year:  2001        PMID: 11693567     DOI: 10.1023/a:1011924017938

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  27 in total

1.  Lanthanide complexes as nuclear magnetic resonance structural probes: paramagnetic anisotropy of shift reagent adducts.

Authors:  W D Horrocks; J P Sipe
Journal:  Science       Date:  1972-09-15       Impact factor: 47.728

Review 2.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

3.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

4.  Solution structure of a calmodulin-target peptide complex by multidimensional NMR.

Authors:  M Ikura; G M Clore; A M Gronenborn; G Zhu; C B Klee; A Bax
Journal:  Science       Date:  1992-05-01       Impact factor: 47.728

5.  A simple modification of Blum's silver stain method allows for 30 minute detection of proteins in polyacrylamide gels.

Authors:  M V Nesterenko; M Tilley; S J Upton
Journal:  J Biochem Biophys Methods       Date:  1994-04

6.  The role of beta-sheet interactions in domain stability, folding, and target recognition reactions of calmodulin.

Authors:  J P Browne; M Strom; S R Martin; P M Bayley
Journal:  Biochemistry       Date:  1997-08-05       Impact factor: 3.162

7.  Ca2+ binding and conformational change in two series of point mutations to the individual Ca(2+)-binding sites of calmodulin.

Authors:  J F Maune; C B Klee; K Beckingham
Journal:  J Biol Chem       Date:  1992-03-15       Impact factor: 5.157

8.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  Use of lanthanide-induced nuclear magnetic resonance shifts for determination of protein structure in solution: EF calcium binding site of carp parvalbumin.

Authors:  L Lee; B D Sykes
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  17 in total

1.  Integrated analysis of the conformation of a protein-linked spin label by crystallography, EPR and NMR spectroscopy.

Authors:  Tim Gruene; Min-Kyu Cho; Irina Karyagina; Hai-Young Kim; Christian Grosse; Karin Giller; Markus Zweckstetter; Stefan Becker
Journal:  J Biomol NMR       Date:  2011-01-28       Impact factor: 2.835

2.  Improving the accuracy of NMR structures of large proteins using pseudocontact shifts as long-range restraints.

Authors:  Vadim Gaponenko; Siddhartha P Sarma; Amanda S Altieri; David A Horita; Jess Li; R Andrew Byrd
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

3.  Engineering encodable lanthanide-binding tags into loop regions of proteins.

Authors:  Katja Barthelmes; Anne M Reynolds; Ezra Peisach; Hendrik R A Jonker; Nicholas J DeNunzio; Karen N Allen; Barbara Imperiali; Harald Schwalbe
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

4.  Multiple alignment of membrane proteins for measuring residual dipolar couplings using lanthanide ions bound to a small metal chelator.

Authors:  Douglas E Kamen; Sean M Cahill; Mark E Girvin
Journal:  J Am Chem Soc       Date:  2007-01-25       Impact factor: 15.419

5.  Bound-state residual dipolar couplings for rapidly exchanging ligands of His-tagged proteins.

Authors:  Ronald D Seidel; Tiandi Zhuang; James H Prestegard
Journal:  J Am Chem Soc       Date:  2007-03-27       Impact factor: 15.419

Review 6.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

7.  Long-Range RNA Structural Information via a Paramagnetically Tagged Reporter Protein.

Authors:  Madeleine Strickland; Jonathan Catazaro; Rohith Rajasekaran; Marie-Paule Strub; Colin O'Hern; Guillermo A Bermejo; Michael F Summers; Jan Marchant; Nico Tjandra
Journal:  J Am Chem Soc       Date:  2019-01-22       Impact factor: 15.419

8.  Using lanthanide ions to align troponin complexes in solution: order of lanthanide occupancy in cardiac troponin C.

Authors:  Grant L Gay; Darrin A Lindhout; Brian D Sykes
Journal:  Protein Sci       Date:  2004-03       Impact factor: 6.725

9.  Phage-induced alignment of membrane proteins enables the measurement and structural analysis of residual dipolar couplings with dipolar waves and lambda-maps.

Authors:  Sang Ho Park; Woo Sung Son; Rishi Mukhopadhyay; Homayoun Valafar; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

10.  Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification.

Authors:  I-Jin Lin; Bin Xia; David S King; Timothy E Machonkin; William M Westler; John L Markley
Journal:  J Am Chem Soc       Date:  2009-10-28       Impact factor: 15.419

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