Literature DB >> 12018483

Structure-independent cross-validation between residual dipolar couplings originating from internal and external orienting media.

Renato Barbieri1, Ivano Bertini, Yong-Min Lee, Claudio Luchinat, Aldrik H Velders.   

Abstract

Lanthanide-substituted calcium binding proteins are known to partially orient in high magnetic fields. Orientation provides residual dipolar couplings (rdc's). Two of these systems, Tm3+- and Dy3+-substituted calbindin D9k, dissolved in an external orienting medium (nonionic liquid crystalline phase) provide rdc values which are the sum of those induced by the lanthanides and by the liquid crystalline phase on the native calcium binding protein. This structure-independent check shows the innocence of the orienting medium with respect to the structure of the protein in solution. Furthermore, the simultaneous use of lanthanide substitution and external orienting media provides a further effective tool to control and tune the orientation tensor.

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Year:  2002        PMID: 12018483     DOI: 10.1023/a:1014980101965

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  39 in total

1.  Domain orientation and dynamics in multidomain proteins from residual dipolar couplings.

Authors:  M W Fischer; J A Losonczi; J L Weaver; J H Prestegard
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

2.  A new approach for applying residual dipolar couplings as restraints in structure elucidation.

Authors:  J Meiler; N Blomberg; M Nilges; C Griesinger
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

3.  Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein.

Authors:  W Y Choy; M Tollinger; G A Mueller; L E Kay
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

4.  Characterization of molecular alignment in aqueous suspensions of Pf1 bacteriophage.

Authors:  M Zweckstetter; A Bax
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

5.  A refined solution structure of hen lysozyme determined using residual dipolar coupling data.

Authors:  H Schwalbe; S B Grimshaw; A Spencer; M Buck; J Boyd; C M Dobson; C Redfield; L J Smith
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

6.  Measurement and application of 1H-19F dipolar couplings in the structure determination of 2'-fluorolabeled RNA.

Authors:  B Luy; J P Marino
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

Review 7.  Structure and evolution of calcium-modulated proteins.

Authors:  R H Kretsinger
Journal:  CRC Crit Rev Biochem       Date:  1980

8.  Study of conformational rearrangement and refinement of structural homology models by the use of heteronuclear dipolar couplings.

Authors:  J J Chou; S Li; A Bax
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

9.  Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values.

Authors:  M Ottiger; A Bax
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

10.  Use of lanthanide-induced nuclear magnetic resonance shifts for determination of protein structure in solution: EF calcium binding site of carp parvalbumin.

Authors:  L Lee; B D Sykes
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

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  5 in total

1.  Principal component method for assessing structural heterogeneity across multiple alignment media.

Authors:  Jean-Christophe Hus; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

Review 2.  Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects.

Authors:  Julia Koehler; Jens Meiler
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-05-27       Impact factor: 9.795

3.  Pulse EPR-enabled interpretation of scarce pseudocontact shifts induced by lanthanide binding tags.

Authors:  Elwy H Abdelkader; Xuejun Yao; Akiva Feintuch; Luke A Adams; Luigi Aurelio; Bim Graham; Daniella Goldfarb; Gottfried Otting
Journal:  J Biomol NMR       Date:  2015-11-23       Impact factor: 2.835

4.  Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings.

Authors:  Loïc Salmon; George M Giambaşu; Evgenia N Nikolova; Katja Petzold; Akash Bhattacharya; David A Case; Hashim M Al-Hashimi
Journal:  J Am Chem Soc       Date:  2015-09-29       Impact factor: 15.419

5.  Site-specific labelling with a metal chelator for protein-structure refinement.

Authors:  Guido Pintacuda; Ahmad Moshref; Ainars Leonchiks; Anatoly Sharipo; Gottfried Otting
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

  5 in total

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