Literature DB >> 25002097

Selective (15)N-labeling of the side-chain amide groups of asparagine and glutamine for applications in paramagnetic NMR spectroscopy.

Chan Cao1, Jia-Liang Chen, Yin Yang, Feng Huang, Gottfried Otting, Xun-Cheng Su.   

Abstract

The side-chain amide groups of asparagine and glutamine play important roles in stabilizing the structural fold of proteins, participating in hydrogen-bonding networks and protein interactions. Selective (15)N-labeling of side-chain amides, however, can be a challenge due to enzyme-catalyzed exchange of amide groups during protein synthesis. In the present study, we developed an efficient way of selectively labeling the side chains of asparagine, or asparagine and glutamine residues with (15)NH2. Using the biosynthesis pathway of tryptophan, a protocol was also established for simultaneous selective (15)N-labeling of the side-chain NH groups of asparagine, glutamine, and tryptophan. In combination with site-specific tagging of the target protein with a lanthanide ion, we show that selective detection of (15)N-labeled side-chains of asparagine and glutamine allows determination of magnetic susceptibility anisotropy tensors based exclusively on pseudocontact shifts of amide side-chain protons.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25002097     DOI: 10.1007/s10858-014-9844-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  54 in total

1.  NMR detection of bifurcated hydrogen bonds in large proteins.

Authors:  Aizhuo Liu; Zhenwei Lu; Jifeng Wang; Lishan Yao; Yue Li; Honggao Yan
Journal:  J Am Chem Soc       Date:  2008-02-05       Impact factor: 15.419

2.  The asparagine synthetase of Escherhic coli. I. Biosynthetic role of the enzyme, purification, and characterization of the reaction products.

Authors:  H Cedar; J H Schwartz
Journal:  J Biol Chem       Date:  1969-08-10       Impact factor: 5.157

3.  L-asparagine uptake in Escherichia coli.

Authors:  R C Willis; C A Woolfolk
Journal:  J Bacteriol       Date:  1975-09       Impact factor: 3.490

4.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli.

Authors:  Lei Zheng; Dirk Kostrewa; Simon Bernèche; Fritz K Winkler; Xiao-Dan Li
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

6.  Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

Authors:  M Buck; J Boyd; C Redfield; D A MacKenzie; D J Jeenes; D B Archer; C M Dobson
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

7.  Protein signal assignments using specific labeling and cell-free synthesis.

Authors:  Jianxia Shi; Jeffrey G Pelton; Ho S Cho; David E Wemmer
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

8.  Bioconjugation of proteins with a paramagnetic NMR and fluorescent tag.

Authors:  Feng Huang; Ying-Ying Pei; Hui-Hui Zuo; Jia-Liang Chen; Yin Yang; Xun-Cheng Su
Journal:  Chemistry       Date:  2013-11-07       Impact factor: 5.236

9.  Asparagine utilization in Escherichia coli.

Authors:  R C Willis; C A Woolfolk
Journal:  J Bacteriol       Date:  1974-04       Impact factor: 3.490

10.  Glutamine-dependent nitrogen transfer in Escherichia coli asparagine synthetase B. Searching for the catalytic triad.

Authors:  S K Boehlein; N G Richards; S M Schuster
Journal:  J Biol Chem       Date:  1994-03-11       Impact factor: 5.157

View more
  6 in total

1.  Site-specific tagging proteins with a rigid, small and stable transition metal chelator, 8-hydroxyquinoline, for paramagnetic NMR analysis.

Authors:  Yin Yang; Feng Huang; Thomas Huber; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2016-01-06       Impact factor: 2.835

Review 2.  Selective labeling and unlabeling strategies in protein solid-state NMR spectroscopy.

Authors:  Denis Lacabanne; Beat H Meier; Anja Böckmann
Journal:  J Biomol NMR       Date:  2017-12-02       Impact factor: 2.835

3.  Conversion of an amide to a high-energy thioester by Staphylococcus aureus sortase A is powered by variable binding affinity for calcium.

Authors:  Xiao Wang; Jia-Liang Chen; Gottfried Otting; Xun-Cheng Su
Journal:  Sci Rep       Date:  2018-11-06       Impact factor: 4.379

4.  Third BIR domain of XIAP binds to both Cu(II) and Cu(I) in multiple sites and with diverse affinities characterized at atomic resolution.

Authors:  Shen-Na Chen; Tian Fang; Jing-Yang Kong; Bin-Bin Pan; Xun-Cheng Su
Journal:  Sci Rep       Date:  2019-05-15       Impact factor: 4.379

5.  Solution structure and interaction with copper in vitro and in living cells of the first BIR domain of XIAP.

Authors:  Meng-Meng Hou; Panagis Polykretis; Enrico Luchinat; Xiao Wang; Shen-Na Chen; Hui-Hui Zuo; Yin Yang; Jia-Liang Chen; Yansheng Ye; Conggang Li; Lucia Banci; Xun-Cheng Su
Journal:  Sci Rep       Date:  2017-11-30       Impact factor: 4.379

6.  In-Cell Trityl-Trityl Distance Measurements on Proteins.

Authors:  Yin Yang; Bin-Bin Pan; Xiaoli Tan; Feng Yang; Yangping Liu; Xun-Cheng Su; Daniella Goldfarb
Journal:  J Phys Chem Lett       Date:  2020-01-28       Impact factor: 6.475

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.