Literature DB >> 10805127

Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state.

A McDermott1, T Polenova, A Bockmann, K W Zilm, E K Paulson, R W Martin, G T Montelione, E K Paulsen.   

Abstract

We demonstrate that high-resolution multidimensional solid state NMR methods can be used to correlate many backbone and side chain chemical shifts for hydrated micro-crystalline U-13C,15N Basic Pancreatic Trypsin Inhibitor (BPTI), using a field strength of 800 MHz for protons, magic angle sample spinning rates of 20 kHz and proton decoupling field strengths of 140 kHz. Results from two homonuclear transfer methods, radio frequency driven dipolar recoupling and spin diffusion, were compared. Typical 13C peak line widths are 0.5 ppm, resulting in Calpha-Cbeta and Calpha-CO regions that exhibit many resolved peaks. Two-dimensional carbon-carbon correlation spectra of BPTI have sufficient resolution to identify and correlate many of the spin systems associated with the amino acids. As a result, we have been able to assign a large number of the spin systems in this protein. The agreement between shifts measured in the solid state and those in solution is typically very good, although some shifts near the ion binding sites differ by at least 1.5 ppm. These studies were conducted with approximately 0.2 to 0.4 micromol of enriched material; the sensitivity of this method is apparently adequate for other biological systems as well.

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Year:  2000        PMID: 10805127     DOI: 10.1023/a:1008391625633

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  22 in total

1.  Rotational resonance NMR study of the active site structure in bacteriorhodopsin: conformation of the Schiff base linkage.

Authors:  L K Thompson; A E McDermott; J Raap; C M van der Wielen; J Lugtenburg; J Herzfeld; R G Griffin
Journal:  Biochemistry       Date:  1992-09-01       Impact factor: 3.162

2.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

3.  Broadband dipolar recoupling in rotating solids: a numerical comparison of some pulse schemes.

Authors:  M Baldus; D G Geurts; B H Meier
Journal:  Solid State Nucl Magn Reson       Date:  1998-06       Impact factor: 2.293

Review 4.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

5.  Carbonyl 13C NMR spectrum of basic pancreatic trypsin inhibitor: resonance assignments by selective amide hydrogen isotope labeling and detection of isotope effects on 13C nuclear shielding.

Authors:  E Tüchsen; P E Hansen
Journal:  Biochemistry       Date:  1988-11-15       Impact factor: 3.162

Review 6.  Multidimensional heteronuclear nuclear magnetic resonance of proteins.

Authors:  G M Clore; A M Gronenborn
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

7.  Propagating structure of Alzheimer's beta-amyloid(10-35) is parallel beta-sheet with residues in exact register.

Authors:  T L Benzinger; D M Gregory; T S Burkoth; H Miller-Auer; D G Lynn; R E Botto; S C Meredith
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

8.  Toward the complete assignment of the carbon nuclear magnetic resonance spectrum of the basic pancreatic trypsin inhibitor.

Authors:  G Wagner; D Brühwiler
Journal:  Biochemistry       Date:  1986-10-07       Impact factor: 3.162

9.  Ligand geometry of the ternary complex of 5-enolpyruvylshikimate-3-phosphate synthase from rotational-echo double-resonance NMR.

Authors:  L M McDowell; C A Klug; D D Beusen; J Schaefer
Journal:  Biochemistry       Date:  1996-04-30       Impact factor: 3.162

10.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

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  67 in total

1.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

2.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

3.  Assignment of amide proton signals by combined evaluation of HN, NN and HNCA MAS-NMR correlation spectra.

Authors:  Barth-Jan van Rossum; Federica Castellani; Jutta Pauli; Kristina Rehbein; J Hollander; Huub J M de Groot; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

4.  Broadband RFDR with adiabatic inversion pulses.

Authors:  Jörg Leppert; Bert Heise; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

5.  RFDR with adiabatic inversion pulses: application to internuclear distance measurements.

Authors:  Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

6.  Chemical shift correlation via RFDR: elimination of resonance offset effects.

Authors:  Bert Heise; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

7.  Unraveling the secrets of Alzheimer's beta-amyloid fibrils.

Authors:  Lynmarie K Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

8.  REDOR: an assessment of the efficacy of dipolar recoupling with adiabatic inversion pulses.

Authors:  Jörg Leppert; Bert Heise; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

9.  Solid-state NMR evidence for inequivalent GvpA subunits in gas vesicles.

Authors:  Astrid C Sivertsen; Marvin J Bayro; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

10.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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