Literature DB >> 11563556

Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

S Luca1, D V Filippov, J H van Boom, H Oschkinat, H J de Groot, M Baldus.   

Abstract

Resonance assignments recently obtained on immobilized polypeptides and a membrane protein aggregate under Magic Angle Spinning are compared to random coil values in the liquid state. The resulting chemical shift differences (secondary chemical shifts) are evaluated in light of the backbone torsion angle psi previously reported using X-ray crystallography. In all cases, a remarkable correlation is found suggesting that the concept of secondary chemical shifts, well established in the liquid state, can be of similar importance in the context of multiple-labelled polypeptides studied under MAS conditions.

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Year:  2001        PMID: 11563556     DOI: 10.1023/a:1011278317489

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  24 in total

Review 1.  Solid-state NMR as a probe of amyloid fibril structure.

Authors:  R Tycko
Journal:  Curr Opin Chem Biol       Date:  2000-10       Impact factor: 8.822

2.  Crystal structure of a Src-homology 3 (SH3) domain.

Authors:  A Musacchio; M Noble; R Pauptit; R Wierenga; M Saraste
Journal:  Nature       Date:  1992-10-29       Impact factor: 49.962

Review 3.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

4.  Conformational transitions and fibrillation mechanism of human calcitonin as studied by high-resolution solid-state 13C NMR.

Authors:  M Kamihira; A Naito; S Tuzi; A Y Nosaka; H Saitô
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

5.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Nuclear magnetic resonance studies of helix-coil transitions in polyamino acids.

Authors:  J L Markley; D H Meadows; O Jardetzky
Journal:  J Mol Biol       Date:  1967-07-14       Impact factor: 5.469

8.  Study of conformational rearrangement and refinement of structural homology models by the use of heteronuclear dipolar couplings.

Authors:  J J Chou; S Li; A Bax
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

9.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

10.  A high-resolution solid-state 13C-NMR study on crystalline bovine heart cytochrome-c oxidase and lysozyme. Dynamic behavior of protein and detergent in the complex.

Authors:  S Tuzi; K Shinzawa-Itoh; T Erata; A Naito; S Yoshikawa; H Saitô
Journal:  Eur J Biochem       Date:  1992-09-15
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  34 in total

1.  Cellular solid-state nuclear magnetic resonance spectroscopy.

Authors:  Marie Renault; Ria Tommassen-van Boxtel; Martine P Bos; Jan Andries Post; Jan Tommassen; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

2.  Solid-state NMR characterization of gas vesicle structure.

Authors:  Astrid C Sivertsen; Marvin J Bayro; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

3.  Probing membrane protein orientation and structure using fast magic-angle-spinning solid-state NMR.

Authors:  O C Andronesi; J R Pfeifer; L Al-Momani; S Ozdirekcan; D T S Rijkers; B Angerstein; S Luca; U Koert; J A Killian; M Baldus
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

4.  Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations.

Authors:  Henrike Heise; Sorin Luca; Bert L de Groot; Helmut Grubmüller; Marc Baldus
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

5.  Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy.

Authors:  Ying Li; Aleksandra Z Kijac; Stephen G Sligar; Chad M Rienstra
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

6.  alphaB-crystallin: a hybrid solid-state/solution-state NMR investigation reveals structural aspects of the heterogeneous oligomer.

Authors:  Stefan Jehle; Barth van Rossum; Joseph R Stout; Satoshi M Noguchi; Katja Falber; Kristina Rehbein; Hartmut Oschkinat; Rachel E Klevit; Ponni Rajagopal
Journal:  J Mol Biol       Date:  2008-11-14       Impact factor: 5.469

7.  Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database.

Authors:  Keisuke Ikeda; Ayako Egawa; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

8.  Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

Authors:  Markus Weingarth; Christian Ader; Adrien S J Melquiond; Deepak Nand; Olaf Pongs; Stefan Becker; Alexandre M J J Bonvin; Marc Baldus
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

9.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

10.  The conformation of neurotensin bound to its G protein-coupled receptor.

Authors:  Sorin Luca; Jim F White; Awinder K Sohal; Dmitri V Filippov; Jacques H van Boom; Reinhard Grisshammer; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

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