Literature DB >> 11572978

On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

M M Teeter1, A Yamano, B Stec, U Mohanty.   

Abstract

Diverse biochemical and biophysical experiments indicate that all proteins, regardless of size or origin, undergo a dynamic transition near 200 K. The cause of this shift in dynamic behavior, termed a "glass transition," and its relation to protein function are important open questions. One explanation postulated for the transition is solidification of correlated motions in proteins below the transition. We verified this conjecture by showing that crambin's radius of gyration (Rg) remains constant below approximately 180 K. We show that both atom position and dynamics of protein and solvent are physically coupled, leading to a novel cooperative state. This glassy state is identified by negative slopes of the Debye-Waller (B) factor vs. temperature. It is composed of multisubstate side chains and solvent. Based on generalization of Adam-Gibbs' notion of a cooperatively rearranging region and decrease of the total entropy with temperature, we calculate the slope of the Debye-Waller factor. The results are in accord with experiment.

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Year:  2001        PMID: 11572978      PMCID: PMC58714          DOI: 10.1073/pnas.201404398

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin.

Authors:  C Jelsch; M M Teeter; V Lamzin; V Pichon-Pesme; R H Blessing; C Lecomte
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

2.  Microscopic origins of entropy, heat capacity and the glass transition in proteins.

Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

3.  Glassy behavior of a protein.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-04-17       Impact factor: 9.161

4.  Orientational ordering and dynamics of the hydrate and exchangeable hydrogen atoms in crystalline crambin.

Authors:  M G Usha; R J Wittebort
Journal:  J Mol Biol       Date:  1989-08-20       Impact factor: 5.469

5.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

6.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Enzyme activity below the dynamical transition at 220 K.

Authors:  R M Daniel; J C Smith; M Ferrand; S Héry; R Dunn; J L Finney
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

8.  Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state.

Authors:  Y Zhou; D Vitkup; M Karplus
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

9.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

10.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

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  34 in total

1.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

2.  Temperature derivative fluorescence spectroscopy as a tool to study dynamical changes in protein crystals.

Authors:  Martin Weik; Xavier Vernede; Antoine Royant; Dominique Bourgeois
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

3.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

4.  Biomolecular cryocrystallography: structural changes during flash-cooling.

Authors:  Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

5.  Protein dynamical transition at 110 K.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

6.  Low-temperature glass transitions of quenched and annealed bovine serum albumin aqueous solutions.

Authors:  Kiyoshi Kawai; Toru Suzuki; Masaharu Oguni
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

7.  GFP-mut2 proteins in trehalose-water matrixes: spatially heterogeneous protein-water-sugar structures.

Authors:  Laura D'Alfonso; Maddalena Collini; Fabio Cannone; Giuseppe Chirico; Barbara Campanini; Grazia Cottone; Lorenzo Cordone
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

8.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

9.  Coupling of protein and hydration-water dynamics in biological membranes.

Authors:  K Wood; M Plazanet; F Gabel; B Kessler; D Oesterhelt; D J Tobias; G Zaccai; M Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

10.  Slow cooling and temperature-controlled protein crystallography.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2009-12-10
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