Literature DB >> 14512730

Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Anja Böckmann1, Adam Lange, Anne Galinier, Sorin Luca, Nicolas Giraud, Michel Juy, Henrike Heise, Roland Montserret, François Penin, Marc Baldus.   

Abstract

Solid state NMR sample preparation and resonance assignments of the U-[13C,15N] 2x10.4 kDa dimeric form of the regulatory protein Crh in microcrystalline, PEG precipitated form are presented. Intra- and interresidue correlations using dipolar polarization transfer methods led to nearly complete sequential assignments of the protein, and to 88% of all 15N, 13C chemical shifts. For several residues, the resonance assignments differ significantly from those reported for the monomeric form analyzed by solution state NMR. Dihedral angles obtained from a TALOS-based statistical analysis suggest that the microcrystalline arrangement of Crh must be similar to the domain-swapped dimeric structure of a single crystal form recently solved using X-ray crystallography. For a limited number of protein residues, a remarkable doubling of the observed NMR resonances is observed indicative of local static or dynamic conformational disorder. Our study reports resonance assignments for the largest protein investigated by solid state NMR so far and describes the conformational dimeric variant of Crh with previously unknown chemical shifts.

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Year:  2003        PMID: 14512730     DOI: 10.1023/a:1025820611009

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

Review 1.  Regulation of carbon catabolism in Bacillus species.

Authors:  J Stülke; W Hillen
Journal:  Annu Rev Microbiol       Date:  2000       Impact factor: 15.500

2.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

3.  Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  Eur J Biochem       Date:  1998-08-15

4.  Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Nathan S Astrof; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

5.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Binding of the catabolite repressor protein CcpA to its DNA target is regulated by phosphorylation of its corepressor HPr.

Authors:  B E Jones; V Dossonnet; E Küster; W Hillen; J Deutscher; R E Klevit
Journal:  J Biol Chem       Date:  1997-10-17       Impact factor: 5.157

9.  Determination of multiple torsion-angle constraints in U-(13)C,(15)N-labeled peptides: 3D (1)H-(15)N-(13)C-(1)H dipolar chemical shift NMR spectroscopy in rotating solids.

Authors:  Chad M Rienstra; Morten Hohwy; Leonard J Mueller; Christopher P Jaroniec; Bernd Reif; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

10.  Backbone and side chain assignment strategies for multiply labeled membrane peptides and proteins in the solid state.

Authors:  Aneta T Petkova; Marc Baldus; Marina Belenky; Mei Hong; Robert G Griffin; Judith Herzfeld
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

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  43 in total

1.  Probing membrane protein orientation and structure using fast magic-angle-spinning solid-state NMR.

Authors:  O C Andronesi; J R Pfeifer; L Al-Momani; S Ozdirekcan; D T S Rijkers; B Angerstein; S Luca; U Koert; J A Killian; M Baldus
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

2.  Biosynthetic site-specific (13) C labeling of the light-harvesting 2 protein complex: a model for solid state NMR structure determination of transmembrane proteins.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

3.  Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy.

Authors:  Ying Li; Aleksandra Z Kijac; Stephen G Sligar; Chad M Rienstra
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

4.  Sensitivity enhancement in (13)C solid-state NMR of protein microcrystals by use of paramagnetic metal ions for optimizing (1)H T(1) relaxation.

Authors:  Nalinda P Wickramasinghe; Mrignayani Kotecha; Ago Samoson; Jaan Past; Yoshitaka Ishii
Journal:  J Magn Reson       Date:  2006-11-27       Impact factor: 2.229

Review 5.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

6.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

7.  Solid-state NMR evidence for inequivalent GvpA subunits in gas vesicles.

Authors:  Astrid C Sivertsen; Marvin J Bayro; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

8.  High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field.

Authors:  Lindsay J Sperling; Andrew J Nieuwkoop; Andrew S Lipton; Deborah A Berthold; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2009-12-02       Impact factor: 2.835

9.  Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively 13C-labelled proteins.

Authors:  Victoria A Higman; Jeremy Flinders; Matthias Hiller; Stefan Jehle; Stefan Markovic; Sebastian Fiedler; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-07-17       Impact factor: 2.835

10.  Resonance Assignments and Secondary Structure Analysis of Dynein Light Chain 8 by Magic Angle Spinning NMR Spectroscopy.

Authors:  Shangjin Sun; Andrew H Butterworth; Sivakumar Paramasivam; Si Yan; Christine M Lightcap; John C Williams; Tatyana Polenova
Journal:  Can J Chem       Date:  2011-08-04       Impact factor: 1.118

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