Literature DB >> 12652133

Assignment of amide proton signals by combined evaluation of HN, NN and HNCA MAS-NMR correlation spectra.

Barth-Jan van Rossum1, Federica Castellani, Jutta Pauli, Kristina Rehbein, J Hollander, Huub J M de Groot, Hartmut Oschkinat.   

Abstract

In this paper, we present a strategy for the (1)H(N) resonance assignment in solid-state magic-angle spinning (MAS) NMR, using the alpha-spectrin SH3 domain as an example. A novel 3D triple resonance experiment is presented that yields intraresidue H(N)-N-C(alpha) correlations, which was essential for the proton assignment. For the observable residues, 52 out of the 54 amide proton resonances were assigned from 2D ((1)H-(15)N) and 3D ((1)H-(15)N-(13)C) heteronuclear correlation spectra. It is demonstrated that proton-driven spin diffusion (PDSD) experiments recorded with long mixing times (4 s) are helpful for confirming the assignment of the protein backbone (15)N resonances and as an aid in the amide proton assignment.

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Year:  2003        PMID: 12652133     DOI: 10.1023/a:1022819921584

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

1.  Measurement of NH bond lengths by fast magic-angle spinning solid-state NMR spectroscopy: a new method for the quantification of hydrogen bonds.

Authors:  X Zhao; J L Sudmeier; W W Bachovchin; M H Levitt
Journal:  J Am Chem Soc       Date:  2001-11-07       Impact factor: 15.419

2.  Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy.

Authors:  Federica Castellani; Barth van Rossum; Annette Diehl; Mario Schubert; Kristina Rehbein; Hartmut Oschkinat
Journal:  Nature       Date:  2002-11-07       Impact factor: 49.962

3.  1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure.

Authors:  F J Blanco; A R Ortiz; L Serrano
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

Review 4.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

5.  Backbone and side-chain 13C and 15N signal assignments of the alpha-spectrin SH3 domain by magic angle spinning solid-state NMR at 17.6 Tesla.

Authors:  J Pauli; M Baldus; B van Rossum; H de Groot; H Oschkinat
Journal:  Chembiochem       Date:  2001-04-02       Impact factor: 3.164

6.  NH-NH vector correlation in peptides by solid-state NMR.

Authors:  B Reif; M Hohwy; C P Jaroniec; C M Rienstra; R G Griffin
Journal:  J Magn Reson       Date:  2000-07       Impact factor: 2.229

7.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

8.  An investigation of the hydrogen-bonding structure in bilirubin by 1H double-quantum magic-angle spinning solid-state NMR spectroscopy.

Authors:  S P Brown; X X Zhu; K Saalwächter; H W Spiess
Journal:  J Am Chem Soc       Date:  2001-05-09       Impact factor: 15.419

9.  Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain.

Authors:  J Pauli; B van Rossum; H Förster; H J de Groot; H Oschkinat
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

10.  Assignment of the nonexchanging protons of the alpha-spectrin SH3 domain by two- and three-dimensional 1H-13C solid-state magic-angle spinning NMR and comparison of solution and solid-state proton chemical shifts.

Authors:  B J van Rossum; F Castellani; K Rehbein; J Pauli; H Oschkinat
Journal:  Chembiochem       Date:  2001-12-03       Impact factor: 3.164

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  16 in total

Review 1.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

2.  Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

Authors:  Tairan Yuwen; Carol Beth Post; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

3.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

4.  Chemical shift correlation at high MAS frequencies employing low-power symmetry-based mixing schemes.

Authors:  Christian Herbst; Jirada Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2011-06-11       Impact factor: 2.835

5.  Sequential backbone assignment based on dipolar amide-to-amide correlation experiments.

Authors:  ShengQi Xiang; Kristof Grohe; Petra Rovó; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2015-05-15       Impact factor: 2.835

6.  Protein residue linking in a single spectrum for magic-angle spinning NMR assignment.

Authors:  Loren B Andreas; Jan Stanek; Tanguy Le Marchand; Andrea Bertarello; Diane Cala-De Paepe; Daniela Lalli; Magdaléna Krejčíková; Camille Doyen; Carl Öster; Benno Knott; Sebastian Wegner; Frank Engelke; Isabella C Felli; Roberta Pierattelli; Nicholas E Dixon; Lyndon Emsley; Torsten Herrmann; Guido Pintacuda
Journal:  J Biomol NMR       Date:  2015-06-16       Impact factor: 2.835

7.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

8.  Detection of dynamic water molecules in a microcrystalline sample of the SH3 domain of alpha-spectrin by MAS solid-state NMR.

Authors:  Veniamin Chevelkov; Katja Faelber; Anne Diehl; Udo Heinemann; Hartmut Oschkinat; Bernd Reif
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

9.  1H-15N correlation spectroscopy of nanocrystalline proteins.

Authors:  Corey R Morcombe; Eric K Paulson; Vadim Gaponenko; R Andrew Byrd; Kurt W Zilm
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

10.  Triple resonance MAS NMR with (13C, 15N) labelled molecules: reduced dimensionality data acquisition via 13C-15N heteronuclear two-spin coherence transfer pathways.

Authors:  Jörg Leppert; Bert Heise; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

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