Literature DB >> 10518521

Salt-induced detour through compact regions of the protein folding landscape.

D E Otzen1, M Oliveberg.   

Abstract

In several cases, inorganic salts have been used to induce partly structured states in protein folding. But what is the nature of these states: Do they represent key stepping stones in the folding process, or are they circumstantial pitfalls in the energy landscape? Here we report that, in the case of the two-state protein S6, the salt-induced collapsed state is off the usual folding routes in the sense that it is prematurely collapsed and slows down folding by several orders of magnitude. Although this species is over-compact, it is not a dead-end trap but may fold by alternative channels to the native state.

Entities:  

Year:  1999        PMID: 10518521      PMCID: PMC18357          DOI: 10.1073/pnas.96.21.11746

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Exploring structures in protein folding funnels with free energy functionals: the denatured ensemble.

Authors:  B A Shoemaker; P G Wolynes
Journal:  J Mol Biol       Date:  1999-04-02       Impact factor: 5.469

2.  Acceleration of the folding of acylphosphatase by stabilization of local secondary structure.

Authors:  F Chiti; N Taddei; P Webster; D Hamada; T Fiaschi; G Ramponi; C M Dobson
Journal:  Nat Struct Biol       Date:  1999-04

3.  Observation of strange kinetics in protein folding.

Authors:  J Sabelko; J Ervin; M Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

4.  Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots.

Authors:  D E Otzen; O Kristensen; M Proctor; M Oliveberg
Journal:  Biochemistry       Date:  1999-05-18       Impact factor: 3.162

5.  The two-disulphide intermediates and the folding pathway of reduced pancreatic trypsin inhibitor.

Authors:  T E Creighton
Journal:  J Mol Biol       Date:  1975-06-25       Impact factor: 5.469

Review 6.  The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding.

Authors:  A R Fersht; A Matouschek; L Serrano
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

Review 7.  Protein denaturation. C. Theoretical models for the mechanism of denaturation.

Authors:  C Tanford
Journal:  Adv Protein Chem       Date:  1970

Review 8.  The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

Authors:  S N Timasheff
Journal:  Annu Rev Biophys Biomol Struct       Date:  1993

9.  Multiparameter kinetic study on the unfolding and refolding of bovine carbonic anhydrase B.

Authors:  L F McCoy; E S Rowe; K P Wong
Journal:  Biochemistry       Date:  1980-10-14       Impact factor: 3.162

10.  Reexamination of the folding of BPTI: predominance of native intermediates.

Authors:  J S Weissman; P S Kim
Journal:  Science       Date:  1991-09-20       Impact factor: 47.728

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  32 in total

1.  Buffed energy landscapes: another solution to the kinetic paradoxes of protein folding.

Authors:  Steven S Plotkin; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

2.  Contact order revisited: influence of protein size on the folding rate.

Authors:  Dmitry N Ivankov; Sergiy O Garbuzynskiy; Eric Alm; Kevin W Plaxco; David Baker; Alexei V Finkelstein
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

3.  Scattered Hammond plots reveal second level of site-specific information in protein folding: phi' (beta++).

Authors:  Linda Hedberg; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-10       Impact factor: 11.205

4.  Latest folding game results: protein A barely frustrates computationalists.

Authors:  Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

5.  Simulation, experiment, and evolution: understanding nucleation in protein S6 folding.

Authors:  Isaac A Hubner; Mikael Oliveberg; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-18       Impact factor: 11.205

6.  Folding without charges.

Authors:  Martin Kurnik; Linda Hedberg; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

7.  Functional amyloid: turning swords into plowshares.

Authors:  Daniel Otzen
Journal:  Prion       Date:  2010-10-17       Impact factor: 3.931

8.  Electrostatically accelerated coupled binding and folding of intrinsically disordered proteins.

Authors:  Debabani Ganguly; Steve Otieno; Brett Waddell; Luigi Iconaru; Richard W Kriwacki; Jianhan Chen
Journal:  J Mol Biol       Date:  2012-06-19       Impact factor: 5.469

9.  p25alpha is flexible but natively folded and binds tubulin with oligomeric stoichiometry.

Authors:  Daniel E Otzen; Ditte M S Lundvig; Reinhard Wimmer; Lotte H Nielsen; Jakob R Pedersen; Poul H Jensen
Journal:  Protein Sci       Date:  2005-05-09       Impact factor: 6.725

Review 10.  Amyloid-a state in many guises: survival of the fittest fibril fold.

Authors:  Jesper S Pedersen; Daniel E Otzen
Journal:  Protein Sci       Date:  2007-11-27       Impact factor: 6.725

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