Literature DB >> 10339536

Observation of strange kinetics in protein folding.

J Sabelko1, J Ervin, M Gruebele.   

Abstract

Highly nonexponential folding kinetics in aqueous solution have been observed during temperature jump-induced refolding of two proteins, yeast phosphoglycerate kinase and a ubiquitin mutant. The observations are most easily interpreted in terms of downhill folding, which posits a heterogeneous ensemble of structures en route to the folded state. The data are also reconciled with exponential kinetics measured under different experimental conditions and with titration experiments indicating cooperative folding.

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Year:  1999        PMID: 10339536      PMCID: PMC26830          DOI: 10.1073/pnas.96.11.6031

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  The role of solvent viscosity in the dynamics of protein conformational changes.

Authors:  A Ansari; C M Jones; E R Henry; J Hofrichter; W A Eaton
Journal:  Science       Date:  1992-06-26       Impact factor: 47.728

2.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

3.  Theory for the folding and stability of globular proteins.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1985-03-12       Impact factor: 3.162

Review 4.  Principles of protein folding--a perspective from simple exact models.

Authors:  K A Dill; S Bromberg; K Yue; K M Fiebig; D P Yee; P D Thomas; H S Chan
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

5.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

6.  Localized solution structure refinement of an F45W variant of ubiquitin using stochastic boundary molecular dynamics and NMR distance restraints.

Authors:  P B Laub; S Khorasanizadeh; H Roder
Journal:  Protein Sci       Date:  1995-05       Impact factor: 6.725

7.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

8.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

9.  Folding and stability of a tryptophan-containing mutant of ubiquitin.

Authors:  S Khorasanizadeh; I D Peters; T R Butt; H Roder
Journal:  Biochemistry       Date:  1993-07-13       Impact factor: 3.162

10.  Cold denaturation-induced conformational changes in phosphoglycerate kinase from yeast.

Authors:  G Damaschun; H Damaschun; K Gast; R Misselwitz; J J Müller; W Pfeil; D Zirwer
Journal:  Biochemistry       Date:  1993-08-03       Impact factor: 3.162

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  102 in total

1.  Chain entropy: spoiler or benefactor in pattern recognition?

Authors:  M Muthukumar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  Hierarchies and logarithmic oscillations in the temporal relaxation patterns of proteins and other complex systems.

Authors:  R Metzler; J Klafter; J Jortner
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

Review 3.  Folding and binding cascades: dynamic landscapes and population shifts.

Authors:  S Kumar; B Ma; C J Tsai; N Sinha; R Nussinov
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

4.  Protein folding and unfolding on a complex energy landscape.

Authors:  D T Leeson; F Gai; H M Rodriguez; L M Gregoret; R B Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

5.  Topology to geometry in protein folding: beta-lactoglobulin.

Authors:  A Fernández; A Colubri; R S Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

6.  Nonglassy kinetics in the folding of a simple single-domain protein.

Authors:  B Gillespie; K W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

7.  Helix formation via conformation diffusion search.

Authors:  Cheng-Yen Huang; Zelleka Getahun; Yongjin Zhu; Jason W Klemke; William F DeGrado; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

Review 8.  Searching for "downhill scenarios" in protein folding.

Authors:  W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

9.  Watching proteins fold one molecule at a time.

Authors:  Elizabeth Rhoades; Eugene Gussakovsky; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-28       Impact factor: 11.205

10.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

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