Literature DB >> 15123824

Latest folding game results: protein A barely frustrates computationalists.

Peter G Wolynes1.   

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Year:  2004        PMID: 15123824      PMCID: PMC406427          DOI: 10.1073/pnas.0402034101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  33 in total

1.  Interpreting the folding kinetics of helical proteins.

Authors:  Y Zhou; M Karplus
Journal:  Nature       Date:  1999-09-23       Impact factor: 49.962

Review 2.  From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding.

Authors:  J E Shea; C L Brooks
Journal:  Annu Rev Phys Chem       Date:  2001       Impact factor: 12.703

Review 3.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

4.  Folding of a small helical protein using hydrogen bonds and hydrophobicity forces.

Authors:  Giorgio Favrin; Anders Irbäck; Stefan Wallin
Journal:  Proteins       Date:  2002-05-01

Review 5.  The present view of the mechanism of protein folding.

Authors:  Valerie Daggett; Alan Fersht
Journal:  Nat Rev Mol Cell Biol       Date:  2003-06       Impact factor: 94.444

6.  An atomically detailed study of the folding pathways of protein A with the stochastic difference equation.

Authors:  Avijit Ghosh; Ron Elber; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-24       Impact factor: 11.205

7.  Protein folding mechanisms and the multidimensional folding funnel.

Authors:  N D Socci; J N Onuchic; P G Wolynes
Journal:  Proteins       Date:  1998-08-01

8.  Exploring the folding free energy surface of a three-helix bundle protein.

Authors:  Z Guo; C L Brooks; E M Boczko
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-16       Impact factor: 11.205

9.  First-principles calculation of the folding free energy of a three-helix bundle protein.

Authors:  E M Boczko; C L Brooks
Journal:  Science       Date:  1995-07-21       Impact factor: 47.728

10.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

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  12 in total

1.  Flexibly varying folding mechanism of a nearly symmetrical protein: B domain of protein A.

Authors:  Kazuhito Itoh; Masaki Sasai
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

2.  Universality and diversity of folding mechanics for three-helix bundle proteins.

Authors:  Jae Shick Yang; Stefan Wallin; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-14       Impact factor: 11.205

3.  Folding domain B of protein A on a dynamically partitioned free energy landscape.

Authors:  Erik D Nelson; Nick V Grishin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

Review 4.  Mechanisms of protein folding.

Authors:  Ylva Ivarsson; Carlo Travaglini-Allocatelli; Maurizio Brunori; Stefano Gianni
Journal:  Eur Biophys J       Date:  2008-01-09       Impact factor: 1.733

Review 5.  Frustration in biomolecules.

Authors:  Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  Q Rev Biophys       Date:  2014-09-16       Impact factor: 5.318

6.  Quantifying the structural requirements of the folding transition state of protein A and other systems.

Authors:  Michael C Baxa; Karl F Freed; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2008-07-01       Impact factor: 5.469

Review 7.  What lessons can be learned from studying the folding of homologous proteins?

Authors:  Adrian A Nickson; Jane Clarke
Journal:  Methods       Date:  2010-06-04       Impact factor: 3.608

8.  Protein fragments: functional and structural roles of their coevolution networks.

Authors:  Linda Dib; Alessandra Carbone
Journal:  PLoS One       Date:  2012-11-05       Impact factor: 3.240

Review 9.  Take home lessons from studies of related proteins.

Authors:  Adrian A Nickson; Beth G Wensley; Jane Clarke
Journal:  Curr Opin Struct Biol       Date:  2012-12-20       Impact factor: 6.809

10.  Transition pathway and its free-energy profile: a protocol for protein folding simulations.

Authors:  In-Ho Lee; Seung-Yeon Kim; Jooyoung Lee
Journal:  Int J Mol Sci       Date:  2013-08-02       Impact factor: 5.923

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