Literature DB >> 18042680

Amyloid-a state in many guises: survival of the fittest fibril fold.

Jesper S Pedersen1, Daniel E Otzen.   

Abstract

Under appropriate conditions, essentially all proteins are able to aggregate to form long, well-ordered and beta-sheet-rich arrays known as amyloid-like fibrils. These fibrils consist of varying numbers of intertwined protofibrils and can for any given protein exhibit a wealth of different forms at the ultrastructural level. Traditionally, this structural variability or polymorphism has been attributed to differences in the assembly of a common protofibril structure. However, recent work on glucagon, insulin, and the Abeta peptide suggests that this polymorphism can occur at the level of secondary structure. Simple variations in either solvent conditions such as temperature, protein concentration, and ionic strength or external mechanical influences such as agitation can lead to formation of fibrils with markedly different characteristics. In some cases, these characteristics can be passed on to new fibrils in a strain-specific manner, similar to what is known for prions. The preferred structure of fibrils formed can be explained in terms of selective pressure and survival of the fittest; the most populated types of fibrils we observe at the end of an experiment are those that had the fastest overall growth rate under the given conditions. Fibrillar polymorphism is probably a consequence of the lack of structural restraints on a nonfunctional conformational state.

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Year:  2007        PMID: 18042680      PMCID: PMC2144592          DOI: 10.1110/ps.073127808

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  72 in total

1.  Two-dimensional structure of beta-amyloid(10-35) fibrils.

Authors:  T L Benzinger; D M Gregory; T S Burkoth; H Miller-Auer; D G Lynn; R E Botto; S C Meredith
Journal:  Biochemistry       Date:  2000-03-28       Impact factor: 3.162

2.  Insulin forms amyloid in a strain-dependent manner: an FT-IR spectroscopic study.

Authors:  Wojciech Dzwolak; Vytautas Smirnovas; Ralf Jansen; Roland Winter
Journal:  Protein Sci       Date:  2004-05-28       Impact factor: 6.725

3.  Conformational variations in an infectious protein determine prion strain differences.

Authors:  Motomasa Tanaka; Peter Chien; Nariman Naber; Roger Cooke; Jonathan S Weissman
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

4.  The changing face of glucagon fibrillation: structural polymorphism and conformational imprinting.

Authors:  Jesper Søndergaard Pedersen; Dantcho Dikov; James L Flink; Hans Aage Hjuler; Gunna Christiansen; Daniel Erik Otzen
Journal:  J Mol Biol       Date:  2005-11-09       Impact factor: 5.469

5.  The 3D profile method for identifying fibril-forming segments of proteins.

Authors:  Michael J Thompson; Stuart A Sievers; John Karanicolas; Magdalena I Ivanova; David Baker; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-07       Impact factor: 11.205

6.  A scientific revolution? The prion anomaly may challenge the central dogma of molecular biology.

Authors:  Alain E Bussard
Journal:  EMBO Rep       Date:  2005-08       Impact factor: 8.807

7.  Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Nathan S Astrof; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

8.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

9.  Studies on the in vitro assembly of a beta 1-40: implications for the search for a beta fibril formation inhibitors.

Authors:  C S Goldsbury; S Wirtz; S A Müller; S Sunderji; P Wicki; U Aebi; P Frey
Journal:  J Struct Biol       Date:  2000-06       Impact factor: 2.867

10.  Protein-only transmission of three yeast prion strains.

Authors:  Chih-Yen King; Ruben Diaz-Avalos
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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  21 in total

Review 1.  The nature of amyloid-like glucagon fibrils.

Authors:  Jesper Søndergaard Pedersen
Journal:  J Diabetes Sci Technol       Date:  2010-11-01

2.  Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology.

Authors:  Bertrand Morel; Lorena Varela; Ana I Azuaga; Francisco Conejero-Lara
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

3.  Accelerated stability studies for moisture-induced aggregation of tetanus toxoid.

Authors:  Nishant Kumar Jain; Ipsita Roy
Journal:  Pharm Res       Date:  2010-11-12       Impact factor: 4.200

4.  Aggregation of a multidomain protein: a coagulation mechanism governs aggregation of a model IgG1 antibody under weak thermal stress.

Authors:  Christian Beyschau Andersen; Mauro Manno; Christian Rischel; Matthías Thórólfsson; Vincenzo Martorana
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

5.  Thermodynamic description of polymorphism in Q- and N-rich peptide aggregates revealed by atomistic simulation.

Authors:  Joshua T Berryman; Sheena E Radford; Sarah A Harris
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

Review 6.  Toxic oligomers and islet beta cell death: guilty by association or convicted by circumstantial evidence?

Authors:  S Zraika; R L Hull; C B Verchere; A Clark; K J Potter; P E Fraser; D P Raleigh; S E Kahn
Journal:  Diabetologia       Date:  2010-02-25       Impact factor: 10.122

7.  Biochemical stabilization of glucagon at alkaline pH.

Authors:  Nicholas Caputo; Melanie A Jackson; Jessica R Castle; Joseph El Youssef; Parkash A Bakhtiani; Colin P Bergstrom; Julie M Carroll; Matthew E Breen; Gerald L Leonard; Larry L David; Charles T Roberts; W Kenneth Ward
Journal:  Diabetes Technol Ther       Date:  2014-06-26       Impact factor: 6.118

8.  "Register-shift" insulin analogs uncover constraints of proteotoxicity in protein evolution.

Authors:  Nischay K Rege; Ming Liu; Balamurugan Dhayalan; Yen-Shan Chen; Nicholas A Smith; Leili Rahimi; Jinhong Sun; Huan Guo; Yanwu Yang; Leena Haataja; Nelson F B Phillips; Jonathan Whittaker; Brian J Smith; Peter Arvan; Faramarz Ismail-Beigi; Michael A Weiss
Journal:  J Biol Chem       Date:  2020-01-31       Impact factor: 5.157

9.  Branching in amyloid fibril growth.

Authors:  Christian Beyschau Andersen; Hisashi Yagi; Mauro Manno; Vincenzo Martorana; Tadato Ban; Gunna Christiansen; Daniel Erik Otzen; Yuji Goto; Christian Rischel
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

10.  Endoplasmic reticulum export, subcellular distribution, and fibril formation by Pmel17 require an intact N-terminal domain junction.

Authors:  Ralf M Leonhardt; Nathalie Vigneron; Christoph Rahner; Benoît J Van den Eynde; Peter Cresswell
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

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