Literature DB >> 10449740

The 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY NMR experiment with diagonal peak suppression.

K V Pervushin1, G Wider, R Riek, K Wüthrich.   

Abstract

In our 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY experiment, the TROSY principle (transverse relaxation-optimized spectroscopy) is used in three-dimensional (3D) (15)N-resolved nuclear Overhauser enhancement spectroscopy (NOESY), which enables resonance assignments by sequential nuclear Overhauser effects and the collection of structural constraints in large (15)N- or (2)H,(15)N-labeled proteins. Our experiment affords optimization of the transverse relaxation in all three frequency dimensions, provides suppression of the strong diagonal autorelaxation peaks, which otherwise tend to interfere with the analysis of nearby informative crosspeaks, and yields improved resolution for the entire spectrum when compared with conventional 3D (15)N-resolved-[(1)H,(1)H]-NOESY, because of the narrower lineshapes along both proton dimensions. The key element of this experiment is an approach for correlating the (15)N and (1)H chemical shifts with two-dimensional ZQ-[(15)N,(1)H]-TROSY, where zero-quantum (ZQ) coherence is generated and the remote cross-correlation between the (1)H and (15)N chemical shift anisotropy interactions is used to reduce transverse relaxation during (15)N evolution. Practical applications are illustrated with spectra of a protein with a molecular mass of 110,000 Da.

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Year:  1999        PMID: 10449740      PMCID: PMC22256          DOI: 10.1073/pnas.96.17.9607

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules.

Authors:  R Riek; G Wider; K Pervushin; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  Gradient and sensitivity enhancement of 2D TROSY with water flip-back, 3D NOESY-TROSY and TOCSY-TROSY experiments.

Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

3.  Crystal structure and reaction mechanism of 7,8-dihydroneopterin aldolase from Staphylococcus aureus.

Authors:  M Hennig; A D'Arcy; I C Hampele; M G Page; C Oefner; G E Dale
Journal:  Nat Struct Biol       Date:  1998-05

4.  An optimized 3D NOESY-HSQC.

Authors:  S Talluri; G Wagner
Journal:  J Magn Reson B       Date:  1996-08

Review 5.  The second decade--into the third millenium.

Authors:  K Wüthrich
Journal:  Nat Struct Biol       Date:  1998-07

6.  Solvent magnetization artifacts in high-field NMR studies of macromolecular hydration.

Authors:  A G Sobol; G Wider; H Iwai; K Wüthrich
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

7.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

8.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

10.  Measurement of amide proton exchange rates and NOEs with water in 13C/15N-enriched calcineurin B.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

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  26 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Cotranslational structure acquisition of nascent polypeptides monitored by NMR spectroscopy.

Authors:  Cédric Eichmann; Steffen Preissler; Roland Riek; Elke Deuerling
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

3.  The apo-structure of the low molecular weight protein-tyrosine phosphatase A (MptpA) from Mycobacterium tuberculosis allows for better target-specific drug development.

Authors:  Tanja Stehle; Sridhar Sreeramulu; Frank Löhr; Christian Richter; Krishna Saxena; Hendrik R A Jonker; Harald Schwalbe
Journal:  J Biol Chem       Date:  2012-08-10       Impact factor: 5.157

4.  A spin-state-selective experiment for measuring heteronuclear one-bond and homonuclear two-bond couplings from an HSQC-type spectrum.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

5.  Improved TROSY-HNCA experiment with suppression of conformational exchange induced relaxation.

Authors:  K Pervushin; V Gallius; C Ritter
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

6.  Enhancement of the steady-state magnetization in TROSY experiments.

Authors:  R Riek
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

7.  [15N,1H]/[13C,1H]-TROSY for simultaneous detection of backbone 15N-1H, aromatic 13C-1H and side-chain 15N-1H2 correlations in large proteins.

Authors:  K Pervushin; D Braun; C Fernández; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-07       Impact factor: 2.835

8.  1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.

Authors:  Youlin Xia; Adelinda Yee; Cheryl H Arrowsmith; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

9.  Protein (19)F NMR in Escherichia coli.

Authors:  Conggang Li; Gui-Fang Wang; Yaqiang Wang; Rachel Creager-Allen; Evan A Lutz; Heidi Scronce; Kristin M Slade; Rebecca A S Ruf; Ryan A Mehl; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

10.  Determination of h2J(NN) and h1J(HN) coupling constants across Watson-Crick base pairs in the Antennapedia homeodomain-DNA complex using TROSY.

Authors:  K Pervushin; C Fernández; R Riek; A Ono; M Kainosho; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

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