Literature DB >> 10220394

Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules.

R Riek1, G Wider, K Pervushin, K Wüthrich.   

Abstract

In common multidimensional NMR experiments for studies of biological macromolecules in solution, magnetization transfers via spin-spin couplings [insensitive nuclei enhanced by polarization transfer (INEPT)] are key elements of the pulse schemes. For molecular weights beyond 100,000, transverse relaxation during the transfer time may become a limiting factor. This paper presents a transfer technique for work with big molecules, cross relaxation-enhanced polarization transfer (CRINEPT), which largely reduces the size limitation of INEPT transfers with the use of cross-correlated relaxation-induced polarization transfer. The rate of polarization transfer by cross-correlated relaxation is proportional to the rotational correlation time, so that it becomes a highly efficient transfer mechanism for solution NMR with very high molecular weights. As a first implementation, [15N,1H]-correlation experiments were designed that make use of cross-correlation between dipole-dipole coupling and chemical shift anisotropy of the 15N---1H-moieties for both CRINEPT and transverse relaxation-optimized spectroscopy (TROSY). When compared with INEPT-based [15N,1H]-TROSY, these experiments yielded up to 3-fold signal enhancement for amide groups of a 110,000-Da protein in aqueous solution at 4 degrees C. CRINEPT opens avenues for solution NMR with supramolecular structures such as membrane proteins solubilized in micelles or lipid vesicles, proteins attached to nucleic acid fragments, or oligomeric proteins.

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Year:  1999        PMID: 10220394      PMCID: PMC21792          DOI: 10.1073/pnas.96.9.4918

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  Crystal structure and reaction mechanism of 7,8-dihydroneopterin aldolase from Staphylococcus aureus.

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Journal:  Nat Struct Biol       Date:  1998-05

Review 2.  The second decade--into the third millenium.

Authors:  K Wüthrich
Journal:  Nat Struct Biol       Date:  1998-07

Review 3.  NMR structures of proteins and protein complexes beyond 20,000 M(r).

Authors:  G M Clore; A M Gronenborn
Journal:  Nat Struct Biol       Date:  1997-10

4.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

5.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

6.  Improved three-dimensional 1H-13C-1H correlation spectroscopy of a 13C-labeled protein using constant-time evolution.

Authors:  M Ikura; L E Kay; A Bax
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

7.  Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

Authors:  L E Kay; D A Torchia; A Bax
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

8.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

9.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

  9 in total
  73 in total

1.  The 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY NMR experiment with diagonal peak suppression.

Authors:  K V Pervushin; G Wider; R Riek; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Geometry dependent two-dimensional heteronuclear multiplet effects in paramagnetic proteins.

Authors:  P K Madhu; R Grandori; K Hohenthanner; P K Mandal; N Müller
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

3.  Nuclear magnetic resonance spectroscopy with the stringent substrate rhodanese bound to the single-ring variant SR1 of the E. coli chaperonin GroEL.

Authors:  Eda Koculi; Reto Horst; Arthur L Horwich; Kurt Wüthrich
Journal:  Protein Sci       Date:  2011-07-07       Impact factor: 6.725

4.  Preparation of the modular multi-domain protein RPA for study by NMR spectroscopy.

Authors:  Chris A Brosey; Marie-Eve Chagot; Walter J Chazin
Journal:  Methods Mol Biol       Date:  2012

5.  CRINEPT-TROSY NMR reveals p53 core domain bound in an unfolded form to the chaperone Hsp90.

Authors:  Stefan Rudiger; Stefan M V Freund; Dmitry B Veprintsev; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-05       Impact factor: 11.205

6.  Data requirements for reliable chemical shift assignments in deuterated proteins.

Authors:  T Kevin Hitchens; Scott A McCallum; Gordon S Rule
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

7.  A novel method for the biosynthesis of deuterated proteins with selective protonation at the aromatic rings of Phe, Tyr and Trp.

Authors:  Sundaresan Rajesh; Daniel Nietlispach; Hiroshi Nakayama; Koji Takio; Ernest D Laue; Takehiko Shibata; Yutaka Ito
Journal:  J Biomol NMR       Date:  2003-09       Impact factor: 2.835

8.  Boundary of quantum evolution under decoherence.

Authors:  Navin Khaneja; Burkhard Luy; Steffen J Glaser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

9.  NMR spectroscopic filtration of polypeptides and proteins in complex mixtures.

Authors:  Senapathy Rajagopalan; Charles Chow; Vinodhkumar Raghunathan; Charles G Fry; Silvia Cavagnero
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

10.  Mars -- robust automatic backbone assignment of proteins.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

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