Literature DB >> 12975580

1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.

Youlin Xia1, Adelinda Yee, Cheryl H Arrowsmith, Xiaolian Gao.   

Abstract

Simultaneous data acquisition in time-sharing (TS) multi-dimensional NMR experiments has been shown an effective means to reduce experimental time, and thus to accelerate structure determination of proteins. This has been accomplished by spin evolution time-sharing of the X and Y heteronuclei, such as (15)N and (13)C, in one of the time dimensions. In this work, we report a new 3D TS experiment, which allows simultaneous (13)C and (15)N spin labeling coherence in both t(1) and t(2) dimensions to give four NOESY spectra in a single 3D experiment. These spectra represent total NOE correlations between (1)H(N) and (1)H(C) resonances. This strategy of double time-sharing (2TS) results in an overall four-fold reduction in experimental time compared with its conventional counterpart. This 3D 2TS CN-CN-H HSQC-NOESY-HSQC pulse sequence also demonstrates improvements in water suppression, (15)N spectral resolution and sensitivity, which were developed based on 2D TS CN-H HSQC and 3D TS H-CN-H NOESY-HSQC experiments. Combining the 3D TS and the 3D 2TS NOESY experiments, NOE assignment ambiguities and errors are considerably reduced. These results will be useful for rapid protein structure determination to complement the effort of discerning the functions of diverse genomic proteins.

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Year:  2003        PMID: 12975580     DOI: 10.1023/a:1025407905478

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

1.  The 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY NMR experiment with diagonal peak suppression.

Authors:  K V Pervushin; G Wider; R Riek; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Three-dimensional protein NMR TROSY-type (15)N-resolved (1)H(N)-(1)H(N) NOESY spectra with diagonal peak suppression.

Authors:  A Meissner; O W SŁrensen
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

3.  SANE (Structure Assisted NOE Evaluation): an automated model-based approach for NOE assignment.

Authors:  B M Duggan; G B Legge; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

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Journal:  Science       Date:  1991-06-07       Impact factor: 47.728

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Journal:  Nat Struct Biol       Date:  1998-12

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Authors:  A Sali
Journal:  Nat Struct Biol       Date:  1998-12

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Authors:  G M Clore; A M Gronenborn; A Bax
Journal:  J Magn Reson       Date:  1998-07       Impact factor: 2.229

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Transverse relaxation optimized 3D and 4D 15n/15N separated NOESY experiments of 15N labeled proteins.

Authors:  Y Xia; K Sze; G Zhu
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

10.  NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.

Authors:  O Zhang; J D Forman-Kay
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

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  10 in total

1.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

2.  A novel member of the YchN-like fold: solution structure of the hypothetical protein Tm0979 from Thermotoga maritima.

Authors:  Joe A Gaspar; Chengsong Liu; Kenrick A Vassall; Gabriela Meglei; Ricardo Stephen; Peter B Stathopulos; Antonio Pineda-Lucena; Bin Wu; Adelinda Yee; Cheryl H Arrowsmith; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

3.  (1)H, (15)N and (13)C chemical shift assignments of RNA repeats binding protein -- CUGBP1ab.

Authors:  Kyu-Yeon Jun; Youlin Xia; Xiaogang Han; Hua Zhang; Lubov Timchenko; Maurice S Swanson; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

4.  GFT projection NMR based resonance assignment of membrane proteins: application to subunit C of E. coli F(1)F (0) ATP synthase in LPPG micelles.

Authors:  Qi Zhang; Hanudatta S Atreya; Douglas E Kamen; Mark E Girvin; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2008-02-14       Impact factor: 2.835

5.  Identification of HN-methyl NOEs in large proteins using simultaneous amide-methyl TROSY-based detection.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2008-11-11       Impact factor: 2.835

6.  The NOXO1β PX domain preferentially targets PtdIns(4,5)P2 and PtdIns(3,4,5)P3.

Authors:  Nicole Y Davis; Linda C McPhail; David A Horita
Journal:  J Mol Biol       Date:  2012-02-08       Impact factor: 5.469

7.  Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Authors:  Bharathwaj Sathyamoorthy; David M Parish; Gaetano T Montelione; Rong Xiao; Thomas Szyperski
Journal:  Chemphyschem       Date:  2014-04-30       Impact factor: 3.102

8.  High-resolution methyl edited GFT NMR experiments for protein resonance assignments and structure determination.

Authors:  Garima Jaipuria; Anushikha Thakur; Patrick D'Silva; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2010-09-14       Impact factor: 2.835

9.  NMR data collection and analysis protocol for high-throughput protein structure determination.

Authors:  Gaohua Liu; Yang Shen; Hanudatta S Atreya; David Parish; Ying Shao; Dinesh K Sukumaran; Rong Xiao; Adelinda Yee; Alexander Lemak; Aneerban Bhattacharya; Thomas A Acton; Cheryl H Arrowsmith; Gaetano T Montelione; Thomas Szyperski
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-18       Impact factor: 11.205

10.  Simultaneous detection of amide and methyl correlations using a time shared NMR experiment: application to binding epitope mapping.

Authors:  Peter Würtz; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2007-08-24       Impact factor: 2.582

  10 in total

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