Literature DB >> 10075915

How translational accuracy influences reading frame maintenance.

P J Farabaugh1, G R Björk.   

Abstract

Most missense errors have little effect on protein function, since they only exchange one amino acid for another. However, processivity errors, frameshifting or premature termination result in a synthesis of an incomplete peptide. There may be a connection between missense and processivity errors, since processivity errors now appear to result from a second error occurring after recruitment of an errant aminoacyl-tRNA, either spontaneous dissociation causing premature termination or translational frameshifting. This is clearest in programmed translational frameshifting where the mRNA programs errant reading by a near-cognate tRNA; this error promotes a second frameshifting error (a dual-error model of frameshifting). The same mechanism can explain frameshifting by suppressor tRNAs, even those with expanded anticodon loops. The previous model that suppressor tRNAs induce quadruplet translocation now appears incorrect for most, and perhaps for all of them. We suggest that the 'spontaneous' tRNA-induced frameshifting and 'programmed' mRNA-induced frameshifting use the same mechanism, although the frequency of frameshifting is very different. This new model of frameshifting suggests that the tRNA is not acting as the yardstick to measure out the length of the translocation step. Rather, the translocation of 3 nucleotides may be an inherent feature of the ribosome.

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Year:  1999        PMID: 10075915      PMCID: PMC1171232          DOI: 10.1093/emboj/18.6.1427

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  51 in total

1.  General nature of the genetic code for proteins.

Authors:  F H CRICK; L BARNETT; S BRENNER; R J WATTS-TOBIN
Journal:  Nature       Date:  1961-12-30       Impact factor: 49.962

Review 2.  Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: programmed reading frame shifts and hops.

Authors:  J F Atkins; R B Weiss; S Thompson; R F Gesteland
Journal:  Annu Rev Genet       Date:  1991       Impact factor: 16.830

3.  The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting.

Authors:  A M Flower; C S McHenry
Journal:  Proc Natl Acad Sci U S A       Date:  1990-05       Impact factor: 11.205

Review 4.  The allosteric three-site model for the ribosomal elongation cycle: features and future.

Authors:  K H Nierhaus
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

5.  Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNA(Pro)2 from Salmonella typhimurium induces suppression of frameshift mutations.

Authors:  G E Sroga; F Nemoto; Y Kuchino; G R Björk
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

6.  Frameshift autoregulation in the gene for Escherichia coli release factor 2: partly functional mutants result in frameshift enhancement.

Authors:  B C Donly; C D Edgar; F M Adamski; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

7.  Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame.

Authors:  A L Blinkowa; J R Walker
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

8.  Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon.

Authors:  Z Tsuchihashi; P O Brown
Journal:  Genes Dev       Date:  1992-03       Impact factor: 11.361

9.  A novel type of + 1 frameshift suppressor: a base substitution in the anticodon stem of a yeast mitochondrial serine-tRNA causes frameshift suppression.

Authors:  A Hüttenhofer; B Weiss-Brummer; G Dirheimer; R P Martin
Journal:  EMBO J       Date:  1990-02       Impact factor: 11.598

10.  Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site.

Authors:  M F Belcourt; P J Farabaugh
Journal:  Cell       Date:  1990-07-27       Impact factor: 41.582

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  58 in total

1.  Imbalance of tRNA(Pro) isoacceptors induces +1 frameshifting at near-cognate codons.

Authors:  Michael O'Connor
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

Review 2.  Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs.

Authors:  H Beier; M Grimm
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

3.  Translational misreading: a tRNA modification counteracts a +2 ribosomal frameshift.

Authors:  D Brégeon; V Colot; M Radman; F Taddei
Journal:  Genes Dev       Date:  2001-09-01       Impact factor: 11.361

4.  Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops.

Authors:  B Moore; C C Nelson; B C Persson; R F Gesteland; J F Atkins
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

5.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

6.  Evidence that the bypassing ribosome travels through the coding gap.

Authors:  Jonathan Gallant; Paul Bonthuis; Dale Lindsley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-23       Impact factor: 11.205

Review 7.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

8.  AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana.

Authors:  Xiaohuan Jin; Zhengyi Lv; Junbao Gao; Rui Zhang; Ting Zheng; Ping Yin; Dongqin Li; Liangcai Peng; Xintao Cao; Yan Qin; Staffan Persson; Bo Zheng; Peng Chen
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

9.  Selective charging of tRNA isoacceptors induced by amino-acid starvation.

Authors:  Kimberly A Dittmar; Michael A Sørensen; Johan Elf; Måns Ehrenberg; Tao Pan
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

10.  A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift.

Authors:  Ramune Leipuviene; Glenn R Björk
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

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