Literature DB >> 2187190

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting.

A M Flower1, C S McHenry.   

Abstract

The tau and gamma subunits of DNA polymerase III holoenzyme are both products of the dnaX gene. Since tau and gamma are required as stoichiometric components of the replicative complex, a mechanism must exist for the cell to coordinate their synthesis and ensure that both subunits are present in an adequate quantity and ratio for assembly. We have proposed that gamma is produced by a translational frameshift event. In this report, we describe the use of dnaX-lacZ fusions in all three reading frames to demonstrate that gamma, the shorter product of dnaX, is generated by ribosomal frameshifting to the -1 reading frame of the mRNA within an oligo(A) sequence that is followed by a sequence predicted to form a stable secondary structure. Immediately after frameshifting a stop codon is encountered, leading to translational termination. Mutagenesis of the oligo(A) sequence abolishes frameshifting, and partial disruption of the predicted distal secondary structure severely impairs the efficiency. Comparison of the expression of lacZ fused to dnaX distal to the site of frameshifting in the -1 and 0 reading frames indicates that the efficiency of frameshifting is approximately 40%.

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Year:  1990        PMID: 2187190      PMCID: PMC53973          DOI: 10.1073/pnas.87.10.3713

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  A new conditional lethal mutator (dnaQ49) in Escherichia coli K12.

Authors:  T Horiuchi; H Maki; M Sekiguchi
Journal:  Mol Gen Genet       Date:  1978-07-25

2.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

3.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

4.  The dnaZ protein, the gamma subunit of DNA polymerase III holoenzyme of Escherichia coli.

Authors:  U Hübscher; A Kornberg
Journal:  J Biol Chem       Date:  1980-12-25       Impact factor: 5.157

5.  Coordinate expression of Escherichia coli dnaA and dnaN genes.

Authors:  T Sako; Y Sakakibara
Journal:  Mol Gen Genet       Date:  1980

6.  Transfer of proteins from gels to diazobenzyloxymethyl-paper and detection with antisera: a method for studying antibody specificity and antigen structure.

Authors:  J Renart; J Reiser; G R Stark
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

7.  Involvement of escherichia coli dnaZ gene product in DNA elongation in vitro.

Authors:  S Wickner; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1976-04       Impact factor: 11.205

8.  Isolation and characterization of dnaX and dnaY temperature-sensitive mutants of Escherichia coli.

Authors:  J M Henson; H Chu; C A Irwin; J R Walker
Journal:  Genetics       Date:  1979-08       Impact factor: 4.562

9.  Identification of the dnaQ gene product and location of the structural gene for RNase H of Escherichia coli by cloning of the genes.

Authors:  T Horiuchi; H Maki; M Maruyama; M Sekiguchi
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

10.  Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region.

Authors:  T Jacks; H D Madhani; F R Masiarz; H E Varmus
Journal:  Cell       Date:  1988-11-04       Impact factor: 41.582

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  114 in total

1.  Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.

Authors:  C Médigue; M Rose; A Viari; A Danchin
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

Review 2.  How translational accuracy influences reading frame maintenance.

Authors:  P J Farabaugh; G R Björk
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

3.  Escherichia coli DNA polymerase III tau- and gamma-subunit conserved residues required for activity in vivo and in vitro.

Authors:  J R Walker; C Hervas; J D Ross; A Blinkova; M J Walbridge; E J Pumarega; M O Park; H R Neely
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

4.  A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'.

Authors:  A E Pritchard; H G Dallmann; B P Glover; C S McHenry
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

Review 5.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

Review 6.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

7.  Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme.

Authors:  J R Carter; M A Franden; R Aebersold; C S McHenry
Journal:  J Bacteriol       Date:  1992-11       Impact factor: 3.490

8.  Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Jiadong Zhou; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

9.  Protein trafficking on sliding clamps.

Authors:  Francisco López de Saro; Roxana E Georgescu; Frank Leu; Mike O'Donnell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-01-29       Impact factor: 6.237

10.  dnaX36 Mutator of Escherichia coli: effects of the {tau} subunit of the DNA polymerase III holoenzyme on chromosomal DNA replication fidelity.

Authors:  Damian Gawel; Piotr Jonczyk; Iwona J Fijalkowska; Roel M Schaaper
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

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