Literature DB >> 11544186

Translational misreading: a tRNA modification counteracts a +2 ribosomal frameshift.

D Brégeon1, V Colot, M Radman, F Taddei.   

Abstract

Errors during gene expression from DNA to proteins via transcription and translation may be deleterious for the functional maintenance of cells. In this paper, extensive genetic studies of the misreading of a GA repeat introduced into the lacZ gene of Escherichia coli indicate that in this bacteria, errors occur predominantly by a +2 translational frameshift, which is controlled by a tRNA modification involving the MnmE and GidA proteins. This ribosomal frameshift results from the coincidence of three events: (1) decreased codon-anticodon affinity at the P-site, which is caused by tRNA hypomodification in mnmE(-) and gidA(-) strains; (2) a repetitive mRNA sequence predisposing to slippage; and (3) increased translational pausing attributable to the presence of a rare codon at the A-site. Based on genetic analysis, we propose that GidA and MnmE act in the same pathway of tRNA modification, the absence of which is responsible for the +2 translational frameshift. The difference in the impact of the mutant gene on cell growth, however, indicates that GidA has at least one other function.

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Year:  2001        PMID: 11544186      PMCID: PMC312767          DOI: 10.1101/gad.207701

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  57 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
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2.  Protein oxidation in response to increased transcriptional or translational errors.

Authors:  S Dukan; A Farewell; M Ballesteros; F Taddei; M Radman; T Nyström
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Mistranslation in E. coli.

Authors:  P Edelmann; J Gallant
Journal:  Cell       Date:  1977-01       Impact factor: 41.582

Review 4.  The allosteric three-site model for the ribosomal elongation cycle: features and future.

Authors:  K H Nierhaus
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

5.  A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences.

Authors:  T Triglia; M G Peterson; D J Kemp
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

Review 6.  Errors and alternatives in reading the universal genetic code.

Authors:  J Parker
Journal:  Microbiol Rev       Date:  1989-09

7.  Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA.

Authors:  E A De Stasio; A E Dahlberg
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469

8.  Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

Authors:  H Dong; L Nilsson; C G Kurland
Journal:  J Mol Biol       Date:  1996-08-02       Impact factor: 5.469

9.  Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli.

Authors:  J Sipley; E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

10.  MTO1 codes for a mitochondrial protein required for respiration in paromomycin-resistant mutants of Saccharomyces cerevisiae.

Authors:  G Colby; M Wu; A Tzagoloff
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  64 in total

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Authors:  Thomas G Kinscherf; David K Willis
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

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4.  Stabilization of G domain conformations in the tRNA-modifying MnmE-GidA complex observed with double electron electron resonance spectroscopy.

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Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

5.  Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations.

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Journal:  Am J Hum Genet       Date:  2006-06-22       Impact factor: 11.025

6.  The structure of the TrmE GTP-binding protein and its implications for tRNA modification.

Authors:  Andrea Scrima; Ingrid R Vetter; M Eugenia Armengod; Alfred Wittinghofer
Journal:  EMBO J       Date:  2004-12-16       Impact factor: 11.598

Review 7.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

8.  Crystallization and preliminary X-ray diffraction analysis of the tRNA-modification enzyme GidA from Aquifex aeolicus.

Authors:  Takuo Osawa; Hideko Inanaga; Tomoyuki Numata
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-04-24

9.  Combination of the loss of cmnm5U34 with the lack of s2U34 modifications of tRNALys, tRNAGlu, and tRNAGln altered mitochondrial biogenesis and respiration.

Authors:  Xinjian Wang; Qingfeng Yan; Min-Xin Guan
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10.  Characterization of human GTPBP3, a GTP-binding protein involved in mitochondrial tRNA modification.

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Journal:  Mol Cell Biol       Date:  2008-10-13       Impact factor: 4.272

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