Literature DB >> 2186364

Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame.

A L Blinkowa1, J R Walker.   

Abstract

The Escherichia coli dnaX gene encodes both the tau and gamma subunits of DNA polymerase III holoenzyme in one reading frame. The 71.1 kDa tau and the shorter gamma share N-terminal sequences. Mutagenesis of a potential ribosomal frameshift signal located at codons 428-430 without changing the amino acid sequence of the tau product, eliminated detectable synthesis of the gamma subunit, suggesting that the reading frame is shifted at that sequence and gamma is terminated by a nonsense codon located in the -1 frame 3 nucleotides downstream of the signal. This seems to be the first known case of a frameshift which is used, along with the termination codon in the -1 frame, to terminate a peptide within a reading frame. [Mutagenesis of a dibasic peptide (lys-lys) at codons 498-499, the site at which a tau'-'LacZ fusion protein was cleaved in vitro (1) had no effect on gamma formation in vivo, suggesting that cleavage observed in vitro is not the mechanism of gamma formation in vivo.

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Year:  1990        PMID: 2186364      PMCID: PMC330589          DOI: 10.1093/nar/18.7.1725

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  40 in total

1.  Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression.

Authors:  J Clare; P Farabaugh
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

2.  A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1.

Authors:  J Mellor; S M Fulton; M J Dobson; W Wilson; S M Kingsman; A J Kingsman
Journal:  Nature       Date:  1985 Jan 17-23       Impact factor: 49.962

3.  The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame.

Authors:  A M Flower; C S McHenry
Journal:  Nucleic Acids Res       Date:  1986-10-24       Impact factor: 16.971

4.  Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli.

Authors:  M E O'Donnell
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

5.  Relation of the Escherichia coli dnaX gene to its two products--the tau and gamma subunits of DNA polymerase III holoenzyme.

Authors:  S H Lee; P Kanda; R C Kennedy; J R Walker
Journal:  Nucleic Acids Res       Date:  1987-10-12       Impact factor: 16.971

6.  Identification of the coding sequence for a reverse transcriptase-like enzyme in a transposable genetic element in Drosophila melanogaster.

Authors:  K Saigo; W Kugimiya; Y Matsuo; S Inouye; K Yoshioka; S Yuki
Journal:  Nature       Date:  1984 Dec 13-19       Impact factor: 49.962

7.  Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

Authors:  W J Craigen; R G Cook; W P Tate; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

8.  Rapid and efficient site-specific mutagenesis without phenotypic selection.

Authors:  T A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  1985-01       Impact factor: 11.205

9.  A new principle of RNA folding based on pseudoknotting.

Authors:  C W Pleij; K Rietveld; L Bosch
Journal:  Nucleic Acids Res       Date:  1985-03-11       Impact factor: 16.971

10.  E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent.

Authors:  R B Weiss; D M Dunn; M Shuh; J F Atkins; R F Gesteland
Journal:  New Biol       Date:  1989-11
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  105 in total

1.  Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.

Authors:  C Médigue; M Rose; A Viari; A Danchin
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

2.  Kinetics of ribosomal pausing during programmed -1 translational frameshifting.

Authors:  J D Lopinski; J D Dinman; J A Bruenn
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

Review 3.  How translational accuracy influences reading frame maintenance.

Authors:  P J Farabaugh; G R Björk
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

4.  Escherichia coli DNA polymerase III tau- and gamma-subunit conserved residues required for activity in vivo and in vitro.

Authors:  J R Walker; C Hervas; J D Ross; A Blinkova; M J Walbridge; E J Pumarega; M O Park; H R Neely
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

5.  A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'.

Authors:  A E Pritchard; H G Dallmann; B P Glover; C S McHenry
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

Review 6.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

Review 7.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

8.  Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme.

Authors:  J R Carter; M A Franden; R Aebersold; C S McHenry
Journal:  J Bacteriol       Date:  1992-11       Impact factor: 3.490

9.  Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Jiadong Zhou; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

10.  Visualizing high error levels during gene expression in living bacterial cells.

Authors:  Mor Meyerovich; Gideon Mamou; Sigal Ben-Yehuda
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

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