Literature DB >> 2251114

Frameshift autoregulation in the gene for Escherichia coli release factor 2: partly functional mutants result in frameshift enhancement.

B C Donly1, C D Edgar, F M Adamski, W P Tate.   

Abstract

The regulation of release factor 2 (RF-2) synthesis in Escherichia coli occurs, at least in part, through autoregulatory feedback exerted at a unique frameshifting step required during RF-2 translation. We have constructed fusions between the genes for RF-2 and E. coli trpE which make direct measurement of frameshifting efficiency possible since both products of regulation, the termination product and the frameshift product, are stable. The addition of purified RF-2 to in vitro expressions of these fusion genes was found to result in decreased frameshifting and increased termination at the regulation site. The frame-shifted trpE-RF-2 products synthesized from these fusions are unique with respect to their functional release factor activities; when tested in assays of two intermediate steps of translational termination, they were found to be partially active for the function of ribosome binding, but inactive for peptidyl-tRNA hydrolysis (release). These are the first examples of release factor mutants selectively active for only one of these function. In vivo these chimeric proteins promote large increases in frameshifting at the RF-2 frameshift region, thereby reversing normal negative autoregulatory feedback and instead supporting fully efficient frameshifting in their own synthesis. This activity provides new evidence for the importance of ribosomal pausing in directing efficient frameshifting at the RF-2 frameshift region.

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Year:  1990        PMID: 2251114      PMCID: PMC332604          DOI: 10.1093/nar/18.22.6517

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Expression of enzymatically active reverse transcriptase in Escherichia coli.

Authors:  N Tanese; M Roth; S P Goff
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

2.  Tightly controlled expression systems for the production and purification of Escherichia coli release factor 1.

Authors:  B C Donly; C D Edgar; J M Williams; W P Tate
Journal:  Biochem Int       Date:  1990

3.  Expression of peptide chain release factor 2 requires high-efficiency frameshift.

Authors:  W J Craigen; C T Caskey
Journal:  Nature       Date:  1986 Jul 17-23       Impact factor: 49.962

4.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

5.  Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

Authors:  W J Craigen; R G Cook; W P Tate; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

6.  Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.

Authors:  M D Biggin; T J Gibson; G F Hong
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

7.  Assembly of the mitochondrial membrane system. CBP6, a yeast nuclear gene necessary for synthesis of cytochrome b.

Authors:  C L Dieckmann; A Tzagoloff
Journal:  J Biol Chem       Date:  1985-02-10       Impact factor: 5.157

8.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.

Authors:  C Yanisch-Perron; J Vieira; J Messing
Journal:  Gene       Date:  1985       Impact factor: 3.688

9.  The sedimentation behaviour of ribonuclease-active and -inactive ribosomes from bacteria.

Authors:  K A Cammack; H E Wade
Journal:  Biochem J       Date:  1965-09       Impact factor: 3.857

10.  Analysis of adenovirus transforming proteins from early regions 1A and 1B with antisera to inducible fusion antigens produced in Escherichia coli.

Authors:  K R Spindler; D S Rosser; A J Berk
Journal:  J Virol       Date:  1984-01       Impact factor: 5.103

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  22 in total

1.  Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

Authors:  Z Li; G Stahl; P J Farabaugh
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

2.  The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246.

Authors:  D N Wilson; D Guévremont; W P Tate
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

Review 3.  How translational accuracy influences reading frame maintenance.

Authors:  P J Farabaugh; G R Björk
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

4.  Nonsense-mediated decay mutants do not affect programmed -1 frameshifting.

Authors:  L Bidou; G Stahl; I Hatin; O Namy; J P Rousset; P J Farabaugh
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

5.  Competition between frameshifting, termination and suppression at the frameshift site in the Escherichia coli release factor-2 mRNA.

Authors:  F M Adamski; B C Donly; W P Tate
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

Review 6.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Microbiol Rev       Date:  1996-03

7.  Escherichia coli release factor 3: resolving the paradox of a typical G protein structure and atypical function with guanine nucleotides.

Authors:  H J Pel; J G Moffat; K Ito; Y Nakamura; W P Tate
Journal:  RNA       Date:  1998-01       Impact factor: 4.942

8.  Metabolic stress promotes stop-codon readthrough and phenotypic heterogeneity.

Authors:  Hong Zhang; Zhihui Lyu; Yongqiang Fan; Christopher R Evans; Karl W Barber; Kinshuk Banerjee; Oleg A Igoshin; Jesse Rinehart; Jiqiang Ling
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 11.205

9.  Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA.

Authors:  S Pande; A Vimaladithan; H Zhao; P J Farabaugh
Journal:  Mol Cell Biol       Date:  1995-01       Impact factor: 4.272

10.  Special peptidyl-tRNA molecules can promote translational frameshifting without slippage.

Authors:  A Vimaladithan; P J Farabaugh
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

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