Literature DB >> 12717454

Maintenance of the correct open reading frame by the ribosome.

Thomas M Hansen1, Pavel V Baranov, Ivaylo P Ivanov, Raymond F Gesteland, John F Atkins.   

Abstract

During translation, a string of non-overlapping triplet codons in messenger RNA is decoded into protein. The ability of a ribosome to decode mRNA without shifting between reading frames is a strict requirement for accurate protein biosynthesis. Despite enormous progress in understanding the mechanism of transfer RNA selection, the mechanism by which the correct reading frame is maintained remains unclear. In this report, evidence is presented that supports the idea that the translational frame is controlled mainly by the stability of codon-anticodon interactions at the P site. The relative instability of such interactions may lead to dissociation of the P-site tRNA from its codon, and formation of a complex with an overlapping codon, the process known as P-site tRNA slippage. We propose that this process is central to all known cases of +1 ribosomal frameshifting, including that required for the decoding of the yeast transposable element Ty3. An earlier model for the decoding of this element proposed 'out-of-frame' binding of A-site tRNA without preceding P-site tRNA slippage.

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Year:  2003        PMID: 12717454      PMCID: PMC1319180          DOI: 10.1038/sj.embor.embor825

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  36 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.

Authors:  F Schluenzen; A Tocilj; R Zarivach; J Harms; M Gluehmann; D Janell; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal:  Cell       Date:  2000-09-01       Impact factor: 41.582

3.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

4.  Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast.

Authors:  A Sundararajan; W A Michaud; Q Qian; G Stahl; P J Farabaugh
Journal:  Mol Cell       Date:  1999-12       Impact factor: 17.970

5.  Expression of peptide chain release factor 2 requires high-efficiency frameshift.

Authors:  W J Craigen; C T Caskey
Journal:  Nature       Date:  1986 Jul 17-23       Impact factor: 49.962

6.  Culture medium for enterobacteria.

Authors:  F C Neidhardt; P L Bloch; D F Smith
Journal:  J Bacteriol       Date:  1974-09       Impact factor: 3.490

7.  Sequence relationship of three valine acceptor tRNAs from Escherichia coli.

Authors:  M Yaniv; B G Barrell
Journal:  Nat New Biol       Date:  1971-09-22

8.  Primary structure of tRNA-Lys of E. coli B.

Authors:  K Chakraburtty; A Steinschneider; R V Case; A H Mehler
Journal:  Nucleic Acids Res       Date:  1975-11       Impact factor: 16.971

9.  Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

Authors:  W J Craigen; R G Cook; W P Tate; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

10.  Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.

Authors:  S Yokoyama; T Watanabe; K Murao; H Ishikura; Z Yamaizumi; S Nishimura; T Miyazawa
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

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  21 in total

Review 1.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

2.  tRNA slippage at the tmRNA resume codon.

Authors:  Michael J Trimble; Amy Minnicus; Kelly P Williams
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

3.  Codon-Anticodon Recognition in the Bacillus subtilis glyQS T Box Riboswitch: RNA-DEPENDENT CODON SELECTION OUTSIDE THE RIBOSOME.

Authors:  Enrico Caserta; Liang-Chun Liu; Frank J Grundy; Tina M Henkin
Journal:  J Biol Chem       Date:  2015-07-30       Impact factor: 5.157

4.  A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift.

Authors:  Ramune Leipuviene; Glenn R Björk
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

5.  Multiple defects in translation associated with altered ribosomal protein L4.

Authors:  Michael O'Connor; Steven T Gregory; Albert E Dahlberg
Journal:  Nucleic Acids Res       Date:  2004-10-27       Impact factor: 16.971

6.  Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Authors:  Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

7.  Alterations in the two globular domains or in the connecting alpha-helix of bacterial ribosomal protein L9 induces +1 frameshifts.

Authors:  Ramune Leipuviene; Glenn R Björk
Journal:  J Bacteriol       Date:  2007-07-27       Impact factor: 3.490

8.  The tri-frame model.

Authors:  Elsje Pienaar; Hendrik J Viljoen
Journal:  J Theor Biol       Date:  2007-12-14       Impact factor: 2.691

Review 9.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

10.  Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.

Authors:  Patrick H Degnan; Adam B Lazarus; Jennifer J Wernegreen
Journal:  Genome Res       Date:  2005-08       Impact factor: 9.043

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