Literature DB >> 15840821

A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift.

Ramune Leipuviene1, Glenn R Björk.   

Abstract

Frameshift mutations can be suppressed by a variety of differently acting external suppressors. The +1 frameshift mutation hisC3072, which has an extra G in a run of Gs, is corrected by the external suppressor mutation sufF44. We have shown that sufF44 and five additional allelic suppressor mutations are located in the gene argU coding for the minor tRNAArgmnm5UCU and alter the secondary and/or tertiary structure of this tRNA. The C61U, G53A, and C32U mutations influence the stability, whereas the C56U, C61U, G53A, and G39A mutations decrease the arginylation of tRNAArgmnm5UCU. The T-10C mutant has a base substitution in the -10 consensus sequence of the argU promoter that reduces threefold the synthesis of tRNAArgmnm5UCU . The lower amount of tRNAArgmnm5UCU or impaired arginylation, either independently or in conjunction, results in inefficient reading of the cognate AGA codon that, in turn, induces frameshifts. According to the sequence of the peptide produced from the suppressed -GGG-GAA-AGA- frameshift site, the frameshifting tRNA in the argU mutants is tRNAGlumnm5s2UUC, which decodes the GAA codon located upstream of the AGA arginine codon, and not the mutated tRNAArgmnm5UCU. We propose that an inefficient decoding of the AGA codon by a defective tRNAArgmnm5UCU stalls the ribosome at the A-site codon allowing the wild-type form of peptidyl-tRNAGlumnm5s2UUC to slip forward 1 nucleotide and thereby re-establish the ribosome in the 0-frame. Similar frame-shifting events could be the main cause of various phenotypes associated with environmental or genetically induced changes in the levels of aminoacylated tRNA.

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Year:  2005        PMID: 15840821      PMCID: PMC1370764          DOI: 10.1261/rna.7256705

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  69 in total

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Review 2.  Ribosomal frameshifting from -2 to +50 nucleotides.

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3.  Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes.

Authors:  G F Chen; M Inouye
Journal:  Nucleic Acids Res       Date:  1990-03-25       Impact factor: 16.971

Review 4.  Universal rules and idiosyncratic features in tRNA identity.

Authors:  R Giegé; M Sissler; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

5.  Reduced misreading of asparagine codons by Escherichia coli tRNALys with hypomodified derivatives of 5-methylaminomethyl-2-thiouridine in the wobble position.

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6.  A minor arginine tRNA mutant limits translation preferentially of a protein dependent on the cognate codon.

Authors:  K S Chen; T C Peters; J R Walker
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8.  Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA(Arg).

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Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

9.  Nucleotides that determine Escherichia coli tRNA(Arg) and tRNA(Lys) acceptor identities revealed by analyses of mutant opal and amber suppressor tRNAs.

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10.  Aminoacylation of hypomodified tRNAGlu in vivo.

Authors:  M K Krüger; M A Sørensen
Journal:  J Mol Biol       Date:  1998-12-04       Impact factor: 5.469

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Review 5.  Methylated nucleosides in tRNA and tRNA methyltransferases.

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Review 6.  Mechanisms and biomedical implications of -1 programmed ribosome frameshifting on viral and bacterial mRNAs.

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7.  Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation.

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