Literature DB >> 9847134

DNA Data Bank of Japan dealing with large-scale data submission.

H Sugawara1, S Miyazaki, T Gojobori, Y Tateno.   

Abstract

The DNA Data Bank of Japan (DDBJ) (http//:www.ddbj.nig.ac.jp) has developed a software system for mass submissions to cope with a recent expansion of EST and genome data submissions. The system is composed of four parts, the WWW data submission, large-scale submission, submission management and storing. Using this system one can submit data on a large number of sequences or a very long sequence while checking the consistency between the annotation and sequence without much effort. DDBJ has received large scale data of Homo sapiens, Arabidopsis and Pyrococcus from Japanese researchers who made full use of the new submission system.

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Year:  1999        PMID: 9847134      PMCID: PMC148089          DOI: 10.1093/nar/27.1.25

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  15 in total

1.  DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams.

Authors:  Y Tateno; S Miyazaki; M Ota; H Sugawara; T Gojobori
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The RDP (Ribosomal Database Project) continues.

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The genome sequence DataBase.

Authors:  C Harger; G Chen; A Farmer; W Huang; J Inman; D Kiphart; F Schilkey; M P Skupski; J Weller
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  EMGLib: the enhanced microbial genomes library (update 2000).

Authors:  G Perrière; P Bessières; B Labedan
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

6.  Human immunodeficiency virus type 1 reverse transcriptase and protease mutation search engine for queries.

Authors:  R W Shafer; D R Jung; B J Betts
Journal:  Nat Med       Date:  2000-11       Impact factor: 53.440

7.  The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group.

Authors:  J A Blake; J T Eppig; J E Richardson; M T Davisson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

8.  GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group.

Authors:  M Ringwald; J T Eppig; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

9.  IMGT, the international ImMunoGeneTics database.

Authors:  M Ruiz; V Giudicelli; C Ginestoux; P Stoehr; J Robinson; J Bodmer; S G Marsh; R Bontrop; M Lemaitre; G Lefranc; D Chaume; M P Lefranc
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

10.  DNA Data Bank of Japan (DDBJ) for genome scale research in life science.

Authors:  Y Tateno; T Imanishi; S Miyazaki; K Fukami-Kobayashi; N Saitou; H Sugawara; T Gojobori
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

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