Literature DB >> 10592172

DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams.

Y Tateno1, S Miyazaki, M Ota, H Sugawara, T Gojobori.   

Abstract

We at DDBJ (http://www.ddbj.nig.ac.jp) process and publicise the massive amounts of data submitted mainly by Japanese genome projects and sequencing teams. It is emphasised that the collaboration between data producing teams and the data bank is crucial in carrying out these processes smoothly. The amount of data submitted in 1999 is so large that it alone exceeds the total amount submitted in the preceding 10 years. To cope with this situation, we have developed tools not only for processing such massive amounts of data but also for efficiently retrieving data on demand.

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Substances:

Year:  2000        PMID: 10592172      PMCID: PMC102400          DOI: 10.1093/nar/28.1.24

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  DNA Data Bank of Japan dealing with large-scale data submission.

Authors:  H Sugawara; S Miyazaki; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

2.  DNA Data Bank of Japan at work on genome sequence data.

Authors:  Y Tateno; K Fukami-Kobayashi; S Miyazaki; H Sugawara; T Gojobori
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

3.  Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.

Authors:  P Carninci; Y Nishiyama; A Westover; M Itoh; S Nagaoka; N Sasaki; Y Okazaki; M Muramatsu; Y Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

4.  Transcriptional sequencing: A method for DNA sequencing using RNA polymerase.

Authors:  N Sasaki; M Izawa; M Watahiki; K Ozawa; T Tanaka; Y Yoneda; S Matsuura; P Carninci; M Muramatsu; Y Okazaki; Y Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

Review 5.  Genome sequence of the nematode C. elegans: a platform for investigating biology.

Authors: 
Journal:  Science       Date:  1998-12-11       Impact factor: 47.728

  5 in total
  19 in total

1.  The RDP-II (Ribosomal Database Project).

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; R J Farris; G M Garrity; G J Olsen; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  GOBASE: the organelle genome database.

Authors:  N Shimko; L Liu; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  ICB database: the gyrB database for identification and classification of bacteria.

Authors:  K Watanabe; J Nelson; S Harayama; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

Review 6.  EBI databases and services.

Authors:  P Rodriguez-Tomé
Journal:  Mol Biotechnol       Date:  2001-07       Impact factor: 2.695

7.  SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Authors:  P Bertone; Y Kluger; N Lan; D Zheng; D Christendat; A Yee; A M Edwards; C H Arrowsmith; G T Montelione; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

8.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Barbara A Rapp; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

9.  JSNP: a database of common gene variations in the Japanese population.

Authors:  Mika Hirakawa; Toshihiro Tanaka; Yoichi Hashimoto; Masako Kuroda; Toshihisa Takagi; Yusuke Nakamura
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  The EMBL Nucleotide Sequence Database.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Evelyn Camon; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Nicole Redaschi; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

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